Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
HOXC12P31275 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 TSEN15P1-201ENST00000423257 515 ntBASIC14.85□□□□□ -0.03
HOXC12P31275 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.85□□□□□ -0.03
HOXC12P31275 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.85□□□□□ -0.03
HOXC12P31275 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.85□□□□□ -0.03
HOXC12P31275 SLC25A6P2-201ENST00000497974 877 ntBASIC14.85□□□□□ -0.03
HOXC12P31275 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXC12P31275 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.85□□□□□ -0.03
HOXC12P31275 PUS1-205ENST00000535067 838 ntTSL 3 BASIC14.85□□□□□ -0.03
HOXC12P31275 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.85□□□□□ -0.03
HOXC12P31275 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.85□□□□□ -0.03
HOXC12P31275 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXC12P31275 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXC12P31275 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXC12P31275 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.85□□□□□ -0.03
HOXC12P31275 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC14.85□□□□□ -0.03
HOXC12P31275 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
HOXC12P31275 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
HOXC12P31275 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
HOXC12P31275 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXC12P31275 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC12P31275 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HOXC12P31275 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
HOXC12P31275 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HOXC12P31275 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
HOXC12P31275 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC14.84□□□□□ -0.03
HOXC12P31275 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 AP000344.2-201ENST00000512987 629 ntBASIC14.84□□□□□ -0.03
HOXC12P31275 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXC12P31275 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
HOXC12P31275 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.84□□□□□ -0.03
HOXC12P31275 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.84□□□□□ -0.03
HOXC12P31275 AC005332.8-201ENST00000622750 2735 ntBASIC14.84□□□□□ -0.03
HOXC12P31275 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HOXC12P31275 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
HOXC12P31275 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC12P31275 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXC12P31275 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
HOXC12P31275 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXC12P31275 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
HOXC12P31275 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC14.83□□□□□ -0.03
HOXC12P31275 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.83□□□□□ -0.03
HOXC12P31275 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC14.83□□□□□ -0.03
HOXC12P31275 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HOXC12P31275 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HOXC12P31275 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HOXC12P31275 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HOXC12P31275 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC12P31275 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC12P31275 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC12P31275 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXC12P31275 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC12P31275 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC12P31275 STX3-203ENST00000529177 1571 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXC12P31275 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC12P31275 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC12P31275 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXC12P31275 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC12P31275 PTMS-202ENST00000389462 773 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXC12P31275 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC12P31275 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.83□□□□□ -0.04
HOXC12P31275 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC14.83□□□□□ -0.04
HOXC12P31275 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.83□□□□□ -0.04
HOXC12P31275 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.83□□□□□ -0.04
HOXC12P31275 ACTG1P14-201ENST00000446382 1122 ntBASIC14.83□□□□□ -0.04
HOXC12P31275 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXC12P31275 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC12P31275 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms