Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
TRIM38O00635 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM38O00635 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM38O00635 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
TRIM38O00635 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.86■□□□□ 0.29
TRIM38O00635 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 AC116353.5-201ENST00000638148 1699 ntBASIC16.86■□□□□ 0.29
TRIM38O00635 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.86■□□□□ 0.29
TRIM38O00635 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM38O00635 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.86■□□□□ 0.29
TRIM38O00635 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.86■□□□□ 0.29
TRIM38O00635 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.86■□□□□ 0.29
TRIM38O00635 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.86■□□□□ 0.29
TRIM38O00635 AC023141.13-201ENST00000604991 943 ntBASIC16.86■□□□□ 0.29
TRIM38O00635 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.86■□□□□ 0.29
TRIM38O00635 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM38O00635 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM38O00635 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.86■□□□□ 0.29
TRIM38O00635 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.86■□□□□ 0.29
TRIM38O00635 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
TRIM38O00635 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM38O00635 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM38O00635 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM38O00635 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM38O00635 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM38O00635 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM38O00635 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
TRIM38O00635 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM38O00635 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM38O00635 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM38O00635 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM38O00635 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.85■□□□□ 0.29
TRIM38O00635 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
TRIM38O00635 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.85■□□□□ 0.29
TRIM38O00635 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
TRIM38O00635 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.85■□□□□ 0.29
TRIM38O00635 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM38O00635 AC106028.4-201ENST00000614509 607 ntBASIC16.85■□□□□ 0.29
TRIM38O00635 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
TRIM38O00635 AC091812.2-201ENST00000619081 385 ntBASIC16.85■□□□□ 0.29
TRIM38O00635 AC007064.4-201ENST00000637740 555 ntBASIC16.85■□□□□ 0.29
TRIM38O00635 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM38O00635 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
TRIM38O00635 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM38O00635 AL590787.1-201ENST00000568856 1315 ntBASIC16.85■□□□□ 0.29
TRIM38O00635 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM38O00635 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM38O00635 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
TRIM38O00635 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM38O00635 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM38O00635 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.85■□□□□ 0.29
TRIM38O00635 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
TRIM38O00635 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
TRIM38O00635 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.84■□□□□ 0.29
TRIM38O00635 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
TRIM38O00635 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.84■□□□□ 0.29
TRIM38O00635 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM38O00635 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM38O00635 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM38O00635 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.84■□□□□ 0.29
TRIM38O00635 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.84■□□□□ 0.29
TRIM38O00635 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.84■□□□□ 0.29
TRIM38O00635 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.84■□□□□ 0.29
TRIM38O00635 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.84■□□□□ 0.29
TRIM38O00635 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM38O00635 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.84■□□□□ 0.29
TRIM38O00635 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM38O00635 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM38O00635 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM38O00635 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TRIM38O00635 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
TRIM38O00635 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms