Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 PMS2P4-201ENST00000412466 1052 ntBASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 AC055876.3-201ENST00000431496 288 ntBASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 AC138649.4-201ENST00000612222 287 ntBASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 AL353732.1-201ENST00000569618 1459 ntBASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TM9SF3Q9HD45 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 UXT-AS1-201ENST00000590504 1525 ntBASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 MIR943-201ENST00000401286 94 ntBASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 KLF2P3-201ENST00000451977 1087 ntBASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 INGX-202ENST00000489074 768 ntBASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 AC109635.5-201ENST00000533593 962 ntBASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 KRT8P23-201ENST00000560090 1207 ntBASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 LINC01225-203ENST00000563550 1244 ntBASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TM9SF3Q9HD45 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 BASP1P1-201ENST00000430708 665 ntBASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.71■□□□□ 0.27
TM9SF3Q9HD45 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms