Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL25A1Q9BXS0 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL25A1Q9BXS0 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL25A1Q9BXS0 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL25A1Q9BXS0 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL25A1Q9BXS0 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.62■□□□□ 0.25
COL25A1Q9BXS0 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 AC134915.1-201ENST00000426461 574 ntBASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 GMFG-209ENST00000600322 622 ntTSL 5 BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL25A1Q9BXS0 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 AC024681.1-201ENST00000521917 487 ntBASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 AC018695.6-201ENST00000614011 534 ntBASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 AC091544.8-201ENST00000619490 361 ntBASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.6■□□□□ 0.25
COL25A1Q9BXS0 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 FAM86LP-201ENST00000478302 853 ntBASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 AC044849.1-201ENST00000519737 1188 ntBASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 MPDU1-223ENST00000582151 728 ntBASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.59■□□□□ 0.25
COL25A1Q9BXS0 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms