Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 AP3S2-216ENST00000617003 1561 ntBASIC16.25■□□□□ 0.19
LMX1AQ8TE12 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
LMX1AQ8TE12 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 AC006277.1-201ENST00000624348 1610 ntBASIC16.24■□□□□ 0.19
LMX1AQ8TE12 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 AC236430.1-201ENST00000402231 743 ntBASIC16.24■□□□□ 0.19
LMX1AQ8TE12 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 RARRES2P9-201ENST00000565168 469 ntBASIC16.24■□□□□ 0.19
LMX1AQ8TE12 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 AC018529.1-201ENST00000613063 361 ntBASIC16.24■□□□□ 0.19
LMX1AQ8TE12 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 AL671710.1-201ENST00000610245 2349 ntBASIC16.24■□□□□ 0.19
LMX1AQ8TE12 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
LMX1AQ8TE12 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 UGT1A2P-201ENST00000454886 866 ntBASIC16.23■□□□□ 0.19
LMX1AQ8TE12 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.23■□□□□ 0.19
LMX1AQ8TE12 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 PP12613-201ENST00000424958 2230 ntBASIC16.22■□□□□ 0.19
LMX1AQ8TE12 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 AC002472.2-201ENST00000442739 958 ntBASIC16.22■□□□□ 0.19
LMX1AQ8TE12 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 TERF1P3-201ENST00000505638 1227 ntBASIC16.22■□□□□ 0.19
LMX1AQ8TE12 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.22■□□□□ 0.19
LMX1AQ8TE12 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms