Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 HNRNPA3P5-201ENST00000455201 833 ntBASIC20.66■□□□□ 0.9
SYNE4Q8N205 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC20.66■□□□□ 0.9
SYNE4Q8N205 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC20.66■□□□□ 0.9
SYNE4Q8N205 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC20.66■□□□□ 0.9
SYNE4Q8N205 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
SYNE4Q8N205 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC20.66■□□□□ 0.9
SYNE4Q8N205 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.66■□□□□ 0.9
SYNE4Q8N205 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC20.66■□□□□ 0.9
SYNE4Q8N205 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC20.66■□□□□ 0.9
SYNE4Q8N205 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE4Q8N205 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SYNE4Q8N205 AC022144.1-201ENST00000602255 1580 ntBASIC20.66■□□□□ 0.9
SYNE4Q8N205 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE4Q8N205 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE4Q8N205 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE4Q8N205 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC20.66■□□□□ 0.9
SYNE4Q8N205 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SYNE4Q8N205 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE4Q8N205 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
SYNE4Q8N205 AL645608.8-201ENST00000606034 2086 ntBASIC20.66■□□□□ 0.9
SYNE4Q8N205 AC005332.8-201ENST00000622750 2735 ntBASIC20.66■□□□□ 0.9
SYNE4Q8N205 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SYNE4Q8N205 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SYNE4Q8N205 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.65■□□□□ 0.9
SYNE4Q8N205 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SYNE4Q8N205 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC20.65■□□□□ 0.9
SYNE4Q8N205 FAM220BP-201ENST00000377689 816 ntBASIC20.65■□□□□ 0.9
SYNE4Q8N205 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SYNE4Q8N205 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20.65■□□□□ 0.9
SYNE4Q8N205 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC20.65■□□□□ 0.9
SYNE4Q8N205 NAA50-208ENST00000497255 789 ntTSL 5 BASIC20.65■□□□□ 0.9
SYNE4Q8N205 AL133215.2-201ENST00000609242 977 ntBASIC20.65■□□□□ 0.9
SYNE4Q8N205 AC008738.7-201ENST00000609744 511 ntBASIC20.65■□□□□ 0.9
SYNE4Q8N205 MIR6752-201ENST00000618442 71 ntBASIC20.65■□□□□ 0.9
SYNE4Q8N205 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SYNE4Q8N205 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SYNE4Q8N205 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC20.65■□□□□ 0.9
SYNE4Q8N205 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SYNE4Q8N205 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
SYNE4Q8N205 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SYNE4Q8N205 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.64■□□□□ 0.9
SYNE4Q8N205 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC20.64■□□□□ 0.9
SYNE4Q8N205 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
SYNE4Q8N205 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE4Q8N205 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE4Q8N205 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE4Q8N205 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE4Q8N205 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE4Q8N205 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE4Q8N205 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC20.64■□□□□ 0.89
SYNE4Q8N205 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE4Q8N205 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC20.64■□□□□ 0.89
SYNE4Q8N205 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC20.64■□□□□ 0.89
SYNE4Q8N205 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
SYNE4Q8N205 MTND6P24-201ENST00000440466 518 ntBASIC20.64■□□□□ 0.89
SYNE4Q8N205 SPTLC1P1-201ENST00000447199 261 ntBASIC20.64■□□□□ 0.89
SYNE4Q8N205 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE4Q8N205 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC20.64■□□□□ 0.89
SYNE4Q8N205 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC20.64■□□□□ 0.89
SYNE4Q8N205 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC20.64■□□□□ 0.89
SYNE4Q8N205 RN7SL828P-201ENST00000607615 303 ntBASIC20.64■□□□□ 0.89
SYNE4Q8N205 AL844908.2-201ENST00000609461 460 ntBASIC20.64■□□□□ 0.89
SYNE4Q8N205 TEX28P1-201ENST00000613479 1221 ntBASIC20.64■□□□□ 0.89
SYNE4Q8N205 TEX28P2-201ENST00000617764 1221 ntBASIC20.64■□□□□ 0.89
SYNE4Q8N205 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE4Q8N205 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE4Q8N205 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE4Q8N205 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SYNE4Q8N205 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC20.63■□□□□ 0.89
SYNE4Q8N205 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC20.63■□□□□ 0.89
SYNE4Q8N205 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.63■□□□□ 0.89
SYNE4Q8N205 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SYNE4Q8N205 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.63■□□□□ 0.89
SYNE4Q8N205 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 DPM2-202ENST00000373110 738 ntTSL 2 BASIC20.63■□□□□ 0.89
SYNE4Q8N205 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC20.63■□□□□ 0.89
SYNE4Q8N205 AC009477.1-201ENST00000452936 217 ntBASIC20.63■□□□□ 0.89
SYNE4Q8N205 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.63■□□□□ 0.89
SYNE4Q8N205 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC20.63■□□□□ 0.89
SYNE4Q8N205 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC20.63■□□□□ 0.89
SYNE4Q8N205 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC20.63■□□□□ 0.89
SYNE4Q8N205 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC20.63■□□□□ 0.89
SYNE4Q8N205 FHL2-212ENST00000607522 759 ntTSL 2 BASIC20.63■□□□□ 0.89
SYNE4Q8N205 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SYNE4Q8N205 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms