Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 SPDYE7P-202ENST00000420373 878 ntBASIC16.11■□□□□ 0.17
COL28A1Q2UY09 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 FAM185BP-201ENST00000443595 716 ntBASIC16.11■□□□□ 0.17
COL28A1Q2UY09 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 AC026150.2-201ENST00000564693 1156 ntBASIC16.11■□□□□ 0.17
COL28A1Q2UY09 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL28A1Q2UY09 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 LINC00304-203ENST00000565008 1864 ntBASIC16.1■□□□□ 0.17
COL28A1Q2UY09 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 AC097637.2-201ENST00000624096 1997 ntBASIC16.1■□□□□ 0.17
COL28A1Q2UY09 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 MIR1909-201ENST00000411312 80 ntBASIC16.1■□□□□ 0.17
COL28A1Q2UY09 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 AC243562.1-201ENST00000560672 389 ntBASIC16.1■□□□□ 0.17
COL28A1Q2UY09 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 LINC01451-201ENST00000623792 534 ntBASIC16.1■□□□□ 0.17
COL28A1Q2UY09 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL28A1Q2UY09 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.09■□□□□ 0.17
COL28A1Q2UY09 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms