Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SCN4AP35499 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN4AP35499 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC19.42■□□□□ 0.7
SCN4AP35499 BCRP2-202ENST00000447763 634 ntBASIC19.42■□□□□ 0.7
SCN4AP35499 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC19.42■□□□□ 0.7
SCN4AP35499 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC19.42■□□□□ 0.7
SCN4AP35499 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.42■□□□□ 0.7
SCN4AP35499 BCRP6-201ENST00000510112 632 ntBASIC19.42■□□□□ 0.7
SCN4AP35499 BCRP7-201ENST00000511549 544 ntBASIC19.42■□□□□ 0.7
SCN4AP35499 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC19.42■□□□□ 0.7
SCN4AP35499 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC19.42■□□□□ 0.7
SCN4AP35499 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC19.42■□□□□ 0.7
SCN4AP35499 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN4AP35499 ABBA01031663.1-201ENST00000635630 790 ntBASIC19.42■□□□□ 0.7
SCN4AP35499 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC19.42■□□□□ 0.7
SCN4AP35499 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN4AP35499 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.42■□□□□ 0.7
SCN4AP35499 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN4AP35499 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN4AP35499 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.42■□□□□ 0.7
SCN4AP35499 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.42■□□□□ 0.7
SCN4AP35499 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SCN4AP35499 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SCN4AP35499 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC19.42■□□□□ 0.7
SCN4AP35499 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SCN4AP35499 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC19.42■□□□□ 0.7
SCN4AP35499 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC19.42■□□□□ 0.7
SCN4AP35499 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SCN4AP35499 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC19.41■□□□□ 0.7
SCN4AP35499 TIMM17BP1-201ENST00000545713 516 ntBASIC19.41■□□□□ 0.7
SCN4AP35499 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SCN4AP35499 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN4AP35499 AL118558.3-201ENST00000607414 1079 ntBASIC19.41■□□□□ 0.7
SCN4AP35499 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN4AP35499 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SCN4AP35499 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SCN4AP35499 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SCN4AP35499 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SCN4AP35499 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SCN4AP35499 SNX33P1-201ENST00000592116 1762 ntBASIC19.41■□□□□ 0.7
SCN4AP35499 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC19.41■□□□□ 0.7
SCN4AP35499 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SCN4AP35499 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
SCN4AP35499 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN4AP35499 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SCN4AP35499 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN4AP35499 FXNP2-201ENST00000411625 547 ntBASIC19.41■□□□□ 0.7
SCN4AP35499 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC19.41■□□□□ 0.7
SCN4AP35499 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC19.41■□□□□ 0.7
SCN4AP35499 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC19.41■□□□□ 0.7
SCN4AP35499 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC19.41■□□□□ 0.7
SCN4AP35499 AC124947.2-201ENST00000547118 1133 ntBASIC19.41■□□□□ 0.7
SCN4AP35499 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN4AP35499 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC19.41■□□□□ 0.7
SCN4AP35499 AC244669.2-201ENST00000612320 853 ntBASIC19.41■□□□□ 0.7
SCN4AP35499 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN4AP35499 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SCN4AP35499 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN4AP35499 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN4AP35499 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SCN4AP35499 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN4AP35499 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN4AP35499 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SCN4AP35499 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN4AP35499 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC19.4■□□□□ 0.7
SCN4AP35499 KRT90P-201ENST00000549264 1064 ntBASIC19.4■□□□□ 0.7
SCN4AP35499 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC19.4■□□□□ 0.7
SCN4AP35499 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SCN4AP35499 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN4AP35499 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN4AP35499 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN4AP35499 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.4■□□□□ 0.7
SCN4AP35499 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SCN4AP35499 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SCN4AP35499 SLC25A24P2-201ENST00000415059 510 ntBASIC19.39■□□□□ 0.7
SCN4AP35499 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
SCN4AP35499 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC19.39■□□□□ 0.7
SCN4AP35499 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
SCN4AP35499 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC19.39■□□□□ 0.7
SCN4AP35499 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC19.39■□□□□ 0.7
SCN4AP35499 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC19.39■□□□□ 0.7
SCN4AP35499 AC015967.2-201ENST00000624092 234 ntBASIC19.39■□□□□ 0.7
SCN4AP35499 AC006435.4-201ENST00000625037 234 ntBASIC19.39■□□□□ 0.7
SCN4AP35499 AL356737.1-201ENST00000634391 234 ntBASIC19.39■□□□□ 0.7
SCN4AP35499 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
SCN4AP35499 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
SCN4AP35499 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SCN4AP35499 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.39■□□□□ 0.69
SCN4AP35499 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN4AP35499 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.39■□□□□ 0.69
SCN4AP35499 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SCN4AP35499 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC19.39■□□□□ 0.69
SCN4AP35499 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SCN4AP35499 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN4AP35499 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.39■□□□□ 0.69
SCN4AP35499 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SCN4AP35499 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN4AP35499 HIST3H2BA-201ENST00000436555 524 ntBASIC19.39■□□□□ 0.69
SCN4AP35499 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.39■□□□□ 0.69
SCN4AP35499 FAM86HP-204ENST00000513466 959 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms