Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.42■□□□□ 0.22
SHMT2P34897 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SHMT2P34897 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.42■□□□□ 0.22
SHMT2P34897 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.41■□□□□ 0.22
SHMT2P34897 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SHMT2P34897 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 AL603756.1-201ENST00000606511 2163 ntBASIC16.41■□□□□ 0.22
SHMT2P34897 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 AC092053.1-201ENST00000605787 1936 ntBASIC16.41■□□□□ 0.22
SHMT2P34897 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
SHMT2P34897 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.41■□□□□ 0.22
SHMT2P34897 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.41■□□□□ 0.22
SHMT2P34897 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.41■□□□□ 0.22
SHMT2P34897 AL513480.1-201ENST00000451731 511 ntBASIC16.41■□□□□ 0.22
SHMT2P34897 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.41■□□□□ 0.22
SHMT2P34897 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.41■□□□□ 0.22
SHMT2P34897 AC091167.2-201ENST00000579581 588 ntBASIC16.41■□□□□ 0.22
SHMT2P34897 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.41■□□□□ 0.22
SHMT2P34897 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.41■□□□□ 0.22
SHMT2P34897 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 KRT8P49-201ENST00000604166 1432 ntBASIC16.41■□□□□ 0.22
SHMT2P34897 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
SHMT2P34897 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.41■□□□□ 0.22
SHMT2P34897 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.41■□□□□ 0.22
SHMT2P34897 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHMT2P34897 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SHMT2P34897 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.4■□□□□ 0.22
SHMT2P34897 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.4■□□□□ 0.22
SHMT2P34897 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.4■□□□□ 0.22
SHMT2P34897 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.4■□□□□ 0.22
SHMT2P34897 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SHMT2P34897 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SHMT2P34897 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.4■□□□□ 0.22
SHMT2P34897 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.4■□□□□ 0.22
SHMT2P34897 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SHMT2P34897 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
SHMT2P34897 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.4■□□□□ 0.22
SHMT2P34897 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.4■□□□□ 0.22
SHMT2P34897 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.4■□□□□ 0.22
SHMT2P34897 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SHMT2P34897 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.4■□□□□ 0.22
SHMT2P34897 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SHMT2P34897 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.4■□□□□ 0.22
SHMT2P34897 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SHMT2P34897 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.4■□□□□ 0.22
SHMT2P34897 AC004877.2-201ENST00000623941 599 ntBASIC16.4■□□□□ 0.22
SHMT2P34897 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.4■□□□□ 0.22
SHMT2P34897 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SHMT2P34897 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SHMT2P34897 AL353732.1-201ENST00000569618 1459 ntBASIC16.4■□□□□ 0.22
SHMT2P34897 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.4■□□□□ 0.22
SHMT2P34897 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 BCAR1-209ENST00000546196 1340 ntBASIC16.4■□□□□ 0.22
SHMT2P34897 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHMT2P34897 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SHMT2P34897 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
SHMT2P34897 AC005915.1-201ENST00000624912 2018 ntBASIC16.4■□□□□ 0.22
SHMT2P34897 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.4■□□□□ 0.22
SHMT2P34897 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
SHMT2P34897 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.39■□□□□ 0.22
SHMT2P34897 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
SHMT2P34897 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms