Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGA1P17096 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.23■□□□□ 0.35
HMGA1P17096 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.23■□□□□ 0.35
HMGA1P17096 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.23■□□□□ 0.35
HMGA1P17096 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
HMGA1P17096 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGA1P17096 AC073592.8-201ENST00000624126 511 ntBASIC17.23■□□□□ 0.35
HMGA1P17096 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGA1P17096 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGA1P17096 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HMGA1P17096 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGA1P17096 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGA1P17096 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGA1P17096 AC006538.1-201ENST00000567905 1585 ntBASIC17.23■□□□□ 0.35
HMGA1P17096 AC105020.1-201ENST00000435356 2205 ntBASIC17.23■□□□□ 0.35
HMGA1P17096 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGA1P17096 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGA1P17096 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
HMGA1P17096 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGA1P17096 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGA1P17096 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HMGA1P17096 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGA1P17096 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
HMGA1P17096 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGA1P17096 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGA1P17096 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGA1P17096 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGA1P17096 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGA1P17096 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGA1P17096 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGA1P17096 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HMGA1P17096 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGA1P17096 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGA1P17096 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGA1P17096 TSSK5P-201ENST00000423978 907 ntBASIC17.22■□□□□ 0.35
HMGA1P17096 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.22■□□□□ 0.35
HMGA1P17096 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.22■□□□□ 0.35
HMGA1P17096 TSPY16P-201ENST00000449843 468 ntBASIC17.22■□□□□ 0.35
HMGA1P17096 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGA1P17096 AC004890.2-204ENST00000481968 304 ntBASIC17.22■□□□□ 0.35
HMGA1P17096 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGA1P17096 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.22■□□□□ 0.35
HMGA1P17096 BANF1P1-201ENST00000553684 263 ntBASIC17.22■□□□□ 0.35
HMGA1P17096 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
HMGA1P17096 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.22■□□□□ 0.35
HMGA1P17096 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGA1P17096 RN7SL204P-201ENST00000582831 262 ntBASIC17.22■□□□□ 0.35
HMGA1P17096 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.22■□□□□ 0.35
HMGA1P17096 AC020765.3-201ENST00000613051 740 ntBASIC17.22■□□□□ 0.35
HMGA1P17096 SPDYE12P-201ENST00000618416 771 ntBASIC17.22■□□□□ 0.35
HMGA1P17096 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGA1P17096 AL590560.3-201ENST00000623350 461 ntBASIC17.22■□□□□ 0.35
HMGA1P17096 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGA1P17096 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGA1P17096 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGA1P17096 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGA1P17096 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGA1P17096 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGA1P17096 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGA1P17096 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGA1P17096 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGA1P17096 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGA1P17096 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGA1P17096 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGA1P17096 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGA1P17096 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGA1P17096 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGA1P17096 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGA1P17096 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HMGA1P17096 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGA1P17096 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGA1P17096 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGA1P17096 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGA1P17096 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGA1P17096 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGA1P17096 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGA1P17096 AC236430.1-201ENST00000402231 743 ntBASIC17.21■□□□□ 0.35
HMGA1P17096 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGA1P17096 AC241585.1-201ENST00000433527 519 ntBASIC17.21■□□□□ 0.35
HMGA1P17096 AC002472.2-201ENST00000442739 958 ntBASIC17.21■□□□□ 0.35
HMGA1P17096 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGA1P17096 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGA1P17096 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.21■□□□□ 0.35
HMGA1P17096 AC027369.6-201ENST00000525520 931 ntBASIC17.21■□□□□ 0.35
HMGA1P17096 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGA1P17096 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
HMGA1P17096 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.21■□□□□ 0.35
HMGA1P17096 AL138828.2-201ENST00000615812 383 ntBASIC17.21■□□□□ 0.35
HMGA1P17096 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGA1P17096 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGA1P17096 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGA1P17096 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HMGA1P17096 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGA1P17096 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
HMGA1P17096 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.34
HMGA1P17096 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
HMGA1P17096 AC100757.3-201ENST00000622361 1406 ntBASIC17.21■□□□□ 0.34
HMGA1P17096 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
HMGA1P17096 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
HMGA1P17096 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.21■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms