Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 AP000344.2-201ENST00000512987 629 ntBASIC16.83■□□□□ 0.28
DKK3Q9UBP4 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 RARRES2P8-201ENST00000566335 367 ntBASIC16.83■□□□□ 0.28
DKK3Q9UBP4 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 AC021097.1-201ENST00000607902 574 ntBASIC16.83■□□□□ 0.28
DKK3Q9UBP4 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 AL513210.1-201ENST00000629608 234 ntBASIC16.83■□□□□ 0.28
DKK3Q9UBP4 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 AC105339.1-204ENST00000636249 355 ntBASIC16.83■□□□□ 0.28
DKK3Q9UBP4 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DKK3Q9UBP4 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 PKD1P1-201ENST00000458669 6805 ntBASIC16.82■□□□□ 0.28
DKK3Q9UBP4 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 RPS8P6-201ENST00000426177 609 ntBASIC16.82■□□□□ 0.28
DKK3Q9UBP4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 AC026120.1-201ENST00000611536 926 ntBASIC16.82■□□□□ 0.28
DKK3Q9UBP4 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
DKK3Q9UBP4 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 RN7SL589P-201ENST00000481268 310 ntBASIC16.81■□□□□ 0.28
DKK3Q9UBP4 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 SNHG9-202ENST00000564014 471 ntBASIC16.81■□□□□ 0.28
DKK3Q9UBP4 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DKK3Q9UBP4 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
DKK3Q9UBP4 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
DKK3Q9UBP4 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
DKK3Q9UBP4 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
DKK3Q9UBP4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
DKK3Q9UBP4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms