Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 MSTO2P-201ENST00000314835 1709 ntBASIC16.7■□□□□ 0.26
TTC28Q96AY4 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.7■□□□□ 0.26
TTC28Q96AY4 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.7■□□□□ 0.26
TTC28Q96AY4 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 AC074044.1-201ENST00000609673 707 ntBASIC16.7■□□□□ 0.26
TTC28Q96AY4 COX6A1P2-201ENST00000620597 330 ntBASIC16.7■□□□□ 0.26
TTC28Q96AY4 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TTC28Q96AY4 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TTC28Q96AY4 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TTC28Q96AY4 PTGES2-AS1-201ENST00000443493 2100 ntBASIC16.69■□□□□ 0.26
TTC28Q96AY4 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TTC28Q96AY4 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TTC28Q96AY4 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TTC28Q96AY4 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.69■□□□□ 0.26
TTC28Q96AY4 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TTC28Q96AY4 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TTC28Q96AY4 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
TTC28Q96AY4 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC16.69■□□□□ 0.26
TTC28Q96AY4 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC16.69■□□□□ 0.26
TTC28Q96AY4 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC16.69■□□□□ 0.26
TTC28Q96AY4 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC16.69■□□□□ 0.26
TTC28Q96AY4 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TTC28Q96AY4 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TTC28Q96AY4 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.69■□□□□ 0.26
TTC28Q96AY4 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TTC28Q96AY4 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TTC28Q96AY4 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TTC28Q96AY4 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TTC28Q96AY4 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TTC28Q96AY4 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC16.69■□□□□ 0.26
TTC28Q96AY4 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TTC28Q96AY4 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16.69■□□□□ 0.26
TTC28Q96AY4 POM121L10P-201ENST00000436994 1285 ntBASIC16.69■□□□□ 0.26
TTC28Q96AY4 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC16.69■□□□□ 0.26
TTC28Q96AY4 CYP2A7P1-201ENST00000595391 815 ntBASIC16.69■□□□□ 0.26
TTC28Q96AY4 AP001505.2-201ENST00000616815 443 ntBASIC16.69■□□□□ 0.26
TTC28Q96AY4 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.69■□□□□ 0.26
TTC28Q96AY4 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.69■□□□□ 0.26
TTC28Q96AY4 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TTC28Q96AY4 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TTC28Q96AY4 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TTC28Q96AY4 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TTC28Q96AY4 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
TTC28Q96AY4 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TTC28Q96AY4 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TTC28Q96AY4 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TTC28Q96AY4 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TTC28Q96AY4 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TTC28Q96AY4 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TTC28Q96AY4 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TTC28Q96AY4 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TTC28Q96AY4 SDCCAG3P2-201ENST00000326105 1023 ntBASIC16.68■□□□□ 0.26
TTC28Q96AY4 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TTC28Q96AY4 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 RN7SL574P-201ENST00000581512 297 ntBASIC16.68■□□□□ 0.26
TTC28Q96AY4 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
TTC28Q96AY4 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 BID-204ENST00000399767 2129 ntTSL 2 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TTC28Q96AY4 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TTC28Q96AY4 CROCCP3-202ENST00000420820 1947 ntBASIC16.67■□□□□ 0.26
TTC28Q96AY4 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TTC28Q96AY4 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TTC28Q96AY4 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TTC28Q96AY4 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TTC28Q96AY4 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms