Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 PKD1P1-201ENST00000458669 6805 ntBASIC16.35■□□□□ 0.21
VRK3Q8IV63 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 AL031055.1-201ENST00000606362 631 ntBASIC16.35■□□□□ 0.21
VRK3Q8IV63 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 AL662844.4-201ENST00000606367 2838 ntBASIC16.34■□□□□ 0.21
VRK3Q8IV63 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 AC074386.1-202ENST00000463561 864 ntBASIC16.34■□□□□ 0.21
VRK3Q8IV63 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.34■□□□□ 0.21
VRK3Q8IV63 AL118508.1-201ENST00000613502 2345 ntBASIC16.34■□□□□ 0.21
VRK3Q8IV63 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VRK3Q8IV63 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.21
VRK3Q8IV63 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VRK3Q8IV63 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VRK3Q8IV63 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.33■□□□□ 0.21
VRK3Q8IV63 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.33■□□□□ 0.21
VRK3Q8IV63 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.33■□□□□ 0.21
VRK3Q8IV63 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms