Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC88AQ3V6T2 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 AC010319.3-201ENST00000597028 470 ntBASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 KRT8P12-202ENST00000472924 1397 ntBASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 ELK1P1-201ENST00000485699 580 ntBASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 AC105021.1-202ENST00000570572 669 ntBASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CCDC88AQ3V6T2 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 MIR6787-201ENST00000616675 61 ntBASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 AC073439.1-201ENST00000624121 1774 ntBASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC88AQ3V6T2 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.83
CCDC88AQ3V6T2 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 AC087499.6-201ENST00000411576 835 ntBASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 RN7SL618P-201ENST00000477850 296 ntBASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 AC099568.2-201ENST00000609194 695 ntBASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 KRT8P44-201ENST00000441609 1350 ntBASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 AC123567.1-201ENST00000548294 1261 ntBASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 WFDC1-204ENST00000613603 549 ntBASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC88AQ3V6T2 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 AC114501.2-201ENST00000439631 535 ntBASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 GALT-202ENST00000450095 1280 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 AL589987.1-201ENST00000453380 819 ntBASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 IGHV3OR16-16-201ENST00000563644 343 ntBASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 AC133552.6-201ENST00000613406 534 ntBASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms