Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
H3F3AP84243 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
H3F3AP84243 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
H3F3AP84243 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
H3F3AP84243 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
H3F3AP84243 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.99□□□□□ -0.01
H3F3AP84243 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC14.99□□□□□ -0.01
H3F3AP84243 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
H3F3AP84243 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
H3F3AP84243 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.99□□□□□ -0.01
H3F3AP84243 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
H3F3AP84243 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.99□□□□□ -0.01
H3F3AP84243 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
H3F3AP84243 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC14.99□□□□□ -0.01
H3F3AP84243 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC14.99□□□□□ -0.01
H3F3AP84243 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.99□□□□□ -0.01
H3F3AP84243 MAL2-202ENST00000531508 892 ntTSL 3 BASIC14.99□□□□□ -0.01
H3F3AP84243 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.99□□□□□ -0.01
H3F3AP84243 KRT19P2-202ENST00000557173 1012 ntBASIC14.99□□□□□ -0.01
H3F3AP84243 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC14.99□□□□□ -0.01
H3F3AP84243 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.99□□□□□ -0.01
H3F3AP84243 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC14.99□□□□□ -0.01
H3F3AP84243 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.99□□□□□ -0.01
H3F3AP84243 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
H3F3AP84243 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
H3F3AP84243 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
H3F3AP84243 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
H3F3AP84243 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
H3F3AP84243 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
H3F3AP84243 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
H3F3AP84243 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
H3F3AP84243 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
H3F3AP84243 AC025580.3-201ENST00000617932 1424 ntBASIC14.99□□□□□ -0.01
H3F3AP84243 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC14.99□□□□□ -0.01
H3F3AP84243 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
H3F3AP84243 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC14.98□□□□□ -0.01
H3F3AP84243 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
H3F3AP84243 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC14.98□□□□□ -0.01
H3F3AP84243 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
H3F3AP84243 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC14.98□□□□□ -0.01
H3F3AP84243 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC14.98□□□□□ -0.01
H3F3AP84243 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 FALEC-201ENST00000416894 566 ntTSL 3 BASIC14.98□□□□□ -0.01
H3F3AP84243 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC14.98□□□□□ -0.01
H3F3AP84243 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
H3F3AP84243 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.98□□□□□ -0.01
H3F3AP84243 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC14.98□□□□□ -0.01
H3F3AP84243 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC14.98□□□□□ -0.01
H3F3AP84243 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
H3F3AP84243 MIR3909-201ENST00000579518 119 ntBASIC14.98□□□□□ -0.01
H3F3AP84243 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.98□□□□□ -0.01
H3F3AP84243 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC14.98□□□□□ -0.01
H3F3AP84243 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.98□□□□□ -0.01
H3F3AP84243 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
H3F3AP84243 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
H3F3AP84243 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
H3F3AP84243 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
H3F3AP84243 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
H3F3AP84243 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC14.97□□□□□ -0.01
H3F3AP84243 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
H3F3AP84243 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC14.97□□□□□ -0.01
H3F3AP84243 HLA-A-202ENST00000376806 1854 ntBASIC14.97□□□□□ -0.01
H3F3AP84243 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.97□□□□□ -0.01
H3F3AP84243 BCAR1-209ENST00000546196 1340 ntBASIC14.97□□□□□ -0.01
H3F3AP84243 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.97□□□□□ -0.01
H3F3AP84243 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC14.97□□□□□ -0.01
H3F3AP84243 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.97□□□□□ -0.01
H3F3AP84243 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
H3F3AP84243 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
H3F3AP84243 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
H3F3AP84243 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
H3F3AP84243 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
H3F3AP84243 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
H3F3AP84243 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
H3F3AP84243 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms