Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGA1P17096 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
HMGA1P17096 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
HMGA1P17096 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGA1P17096 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGA1P17096 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
HMGA1P17096 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
HMGA1P17096 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGA1P17096 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGA1P17096 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
HMGA1P17096 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
HMGA1P17096 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGA1P17096 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
HMGA1P17096 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGA1P17096 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
HMGA1P17096 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
HMGA1P17096 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.25■□□□□ 0.35
HMGA1P17096 AL035633.1-201ENST00000406139 838 ntBASIC17.25■□□□□ 0.35
HMGA1P17096 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.25■□□□□ 0.35
HMGA1P17096 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.25■□□□□ 0.35
HMGA1P17096 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGA1P17096 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGA1P17096 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.25■□□□□ 0.35
HMGA1P17096 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.25■□□□□ 0.35
HMGA1P17096 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGA1P17096 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.25■□□□□ 0.35
HMGA1P17096 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGA1P17096 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HMGA1P17096 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGA1P17096 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.25■□□□□ 0.35
HMGA1P17096 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGA1P17096 AC106820.2-201ENST00000563775 3264 ntBASIC17.25■□□□□ 0.35
HMGA1P17096 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGA1P17096 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 GGT4P-201ENST00000623672 1708 ntBASIC17.24■□□□□ 0.35
HMGA1P17096 BCL2-203ENST00000589955 5011 ntBASIC17.24■□□□□ 0.35
HMGA1P17096 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGA1P17096 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
HMGA1P17096 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HMGA1P17096 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.24■□□□□ 0.35
HMGA1P17096 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.24■□□□□ 0.35
HMGA1P17096 AC138761.1-201ENST00000584393 385 ntBASIC17.24■□□□□ 0.35
HMGA1P17096 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.24■□□□□ 0.35
HMGA1P17096 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.24■□□□□ 0.35
HMGA1P17096 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 GPAA1P2-202ENST00000606848 1787 ntBASIC17.24■□□□□ 0.35
HMGA1P17096 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.24■□□□□ 0.35
HMGA1P17096 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.24■□□□□ 0.35
HMGA1P17096 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGA1P17096 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HMGA1P17096 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGA1P17096 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HMGA1P17096 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGA1P17096 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HMGA1P17096 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HMGA1P17096 AC005915.1-201ENST00000624912 2018 ntBASIC17.23■□□□□ 0.35
HMGA1P17096 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGA1P17096 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGA1P17096 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGA1P17096 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
HMGA1P17096 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGA1P17096 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGA1P17096 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGA1P17096 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.23■□□□□ 0.35
HMGA1P17096 AC093724.1-201ENST00000448659 1027 ntBASIC17.23■□□□□ 0.35
HMGA1P17096 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms