Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL3A1P02461 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC21.89■■□□□ 1.09
COL3A1P02461 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL3A1P02461 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC21.89■■□□□ 1.09
COL3A1P02461 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL3A1P02461 AC106820.2-201ENST00000563775 3264 ntBASIC21.89■■□□□ 1.09
COL3A1P02461 AC020916.1-201ENST00000587762 1774 ntBASIC21.89■■□□□ 1.09
COL3A1P02461 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL3A1P02461 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL3A1P02461 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC21.89■■□□□ 1.09
COL3A1P02461 AL080243.2-201ENST00000418783 582 ntBASIC21.89■■□□□ 1.09
COL3A1P02461 SPDYE7P-202ENST00000420373 878 ntBASIC21.89■■□□□ 1.09
COL3A1P02461 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL3A1P02461 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC21.89■■□□□ 1.09
COL3A1P02461 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC21.89■■□□□ 1.09
COL3A1P02461 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL3A1P02461 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL3A1P02461 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.09
COL3A1P02461 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL3A1P02461 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL3A1P02461 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC21.89■■□□□ 1.09
COL3A1P02461 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL3A1P02461 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL3A1P02461 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
COL3A1P02461 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC21.88■■□□□ 1.09
COL3A1P02461 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL3A1P02461 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC21.88■■□□□ 1.09
COL3A1P02461 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL3A1P02461 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL3A1P02461 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL3A1P02461 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC21.88■■□□□ 1.09
COL3A1P02461 HNRNPFP1-201ENST00000391730 1133 ntBASIC21.88■■□□□ 1.09
COL3A1P02461 BAD-202ENST00000394531 631 ntTSL 3 BASIC21.88■■□□□ 1.09
COL3A1P02461 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC21.88■■□□□ 1.09
COL3A1P02461 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC21.88■■□□□ 1.09
COL3A1P02461 BAD-207ENST00000544785 525 ntTSL 3 BASIC21.88■■□□□ 1.09
COL3A1P02461 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC21.88■■□□□ 1.09
COL3A1P02461 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
COL3A1P02461 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC21.88■■□□□ 1.09
COL3A1P02461 MIR4453-201ENST00000584019 89 ntBASIC21.88■■□□□ 1.09
COL3A1P02461 AL158211.3-201ENST00000607385 239 ntBASIC21.88■■□□□ 1.09
COL3A1P02461 AL133215.2-201ENST00000609242 977 ntBASIC21.88■■□□□ 1.09
COL3A1P02461 AC018529.1-201ENST00000613063 361 ntBASIC21.88■■□□□ 1.09
COL3A1P02461 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL3A1P02461 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL3A1P02461 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
COL3A1P02461 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC21.88■■□□□ 1.09
COL3A1P02461 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.88■■□□□ 1.09
COL3A1P02461 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC21.88■■□□□ 1.09
COL3A1P02461 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL3A1P02461 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.87■■□□□ 1.09
COL3A1P02461 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL3A1P02461 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC21.87■■□□□ 1.09
COL3A1P02461 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL3A1P02461 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL3A1P02461 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC21.87■■□□□ 1.09
COL3A1P02461 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL3A1P02461 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC21.87■■□□□ 1.09
COL3A1P02461 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL3A1P02461 TREML5P-201ENST00000421694 576 ntBASIC21.87■■□□□ 1.09
COL3A1P02461 AC107890.1-201ENST00000422478 521 ntBASIC21.87■■□□□ 1.09
COL3A1P02461 AC098859.1-201ENST00000502915 1238 ntBASIC21.87■■□□□ 1.09
COL3A1P02461 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC21.87■■□□□ 1.09
COL3A1P02461 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL3A1P02461 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC21.87■■□□□ 1.09
COL3A1P02461 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL3A1P02461 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
COL3A1P02461 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL3A1P02461 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
COL3A1P02461 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
COL3A1P02461 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL3A1P02461 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL3A1P02461 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL3A1P02461 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL3A1P02461 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC21.86■■□□□ 1.09
COL3A1P02461 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC21.86■■□□□ 1.09
COL3A1P02461 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL3A1P02461 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL3A1P02461 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL3A1P02461 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL3A1P02461 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL3A1P02461 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL3A1P02461 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC21.86■■□□□ 1.09
COL3A1P02461 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC21.86■■□□□ 1.09
COL3A1P02461 AC005052.1-201ENST00000625181 2492 ntBASIC21.86■■□□□ 1.09
COL3A1P02461 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL3A1P02461 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
COL3A1P02461 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL3A1P02461 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL3A1P02461 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
COL3A1P02461 FO538757.1-201ENST00000623083 1397 ntBASIC21.86■■□□□ 1.09
COL3A1P02461 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC21.86■■□□□ 1.09
COL3A1P02461 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL3A1P02461 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL3A1P02461 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
COL3A1P02461 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL3A1P02461 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC21.85■■□□□ 1.09
COL3A1P02461 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC21.85■■□□□ 1.09
COL3A1P02461 RNA5SP410-201ENST00000516285 106 ntBASIC21.85■■□□□ 1.09
COL3A1P02461 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms