Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC23.16■■□□□ 1.3
NPHP4O75161 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC23.16■■□□□ 1.3
NPHP4O75161 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC23.16■■□□□ 1.3
NPHP4O75161 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP4O75161 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
NPHP4O75161 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NPHP4O75161 TP73-213ENST00000604479 1623 ntTSL 5 BASIC23.15■■□□□ 1.3
NPHP4O75161 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NPHP4O75161 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NPHP4O75161 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NPHP4O75161 SNX33P1-201ENST00000592116 1762 ntBASIC23.15■■□□□ 1.3
NPHP4O75161 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC23.15■■□□□ 1.3
NPHP4O75161 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC23.15■■□□□ 1.3
NPHP4O75161 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
NPHP4O75161 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NPHP4O75161 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC23.15■■□□□ 1.3
NPHP4O75161 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
NPHP4O75161 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
NPHP4O75161 SLC25A24P2-201ENST00000415059 510 ntBASIC23.15■■□□□ 1.3
NPHP4O75161 CALR4P-201ENST00000431943 946 ntBASIC23.15■■□□□ 1.3
NPHP4O75161 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC23.15■■□□□ 1.3
NPHP4O75161 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC23.15■■□□□ 1.3
NPHP4O75161 AC133539.2-201ENST00000604757 467 ntBASIC23.15■■□□□ 1.3
NPHP4O75161 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC23.14■■□□□ 1.3
NPHP4O75161 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
NPHP4O75161 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
NPHP4O75161 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
NPHP4O75161 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
NPHP4O75161 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
NPHP4O75161 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP4O75161 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC23.14■■□□□ 1.29
NPHP4O75161 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP4O75161 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP4O75161 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP4O75161 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
NPHP4O75161 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC23.14■■□□□ 1.29
NPHP4O75161 MGST3-203ENST00000367885 680 ntTSL 2 BASIC23.14■■□□□ 1.29
NPHP4O75161 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP4O75161 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC23.14■■□□□ 1.29
NPHP4O75161 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC23.14■■□□□ 1.29
NPHP4O75161 AL139010.1-201ENST00000454878 894 ntBASIC23.14■■□□□ 1.29
NPHP4O75161 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC23.14■■□□□ 1.29
NPHP4O75161 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC23.14■■□□□ 1.29
NPHP4O75161 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC23.14■■□□□ 1.29
NPHP4O75161 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC23.14■■□□□ 1.29
NPHP4O75161 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP4O75161 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC23.14■■□□□ 1.29
NPHP4O75161 MIR6727-201ENST00000620702 65 ntBASIC23.14■■□□□ 1.29
NPHP4O75161 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP4O75161 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
NPHP4O75161 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
NPHP4O75161 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC23.14■■□□□ 1.29
NPHP4O75161 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP4O75161 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP4O75161 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP4O75161 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
NPHP4O75161 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC23.13■■□□□ 1.29
NPHP4O75161 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP4O75161 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
NPHP4O75161 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP4O75161 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP4O75161 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC23.13■■□□□ 1.29
NPHP4O75161 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC23.13■■□□□ 1.29
NPHP4O75161 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC23.13■■□□□ 1.29
NPHP4O75161 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC23.13■■□□□ 1.29
NPHP4O75161 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC23.13■■□□□ 1.29
NPHP4O75161 FAM86HP-204ENST00000513466 959 ntBASIC23.13■■□□□ 1.29
NPHP4O75161 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP4O75161 RN7SL560P-201ENST00000577943 264 ntBASIC23.13■■□□□ 1.29
NPHP4O75161 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP4O75161 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP4O75161 NME9-203ENST00000383180 2133 ntTSL 2 BASIC23.13■■□□□ 1.29
NPHP4O75161 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP4O75161 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NPHP4O75161 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC23.12■■□□□ 1.29
NPHP4O75161 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
NPHP4O75161 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
NPHP4O75161 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC23.12■■□□□ 1.29
NPHP4O75161 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
NPHP4O75161 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC23.12■■□□□ 1.29
NPHP4O75161 AC116353.5-201ENST00000638148 1699 ntBASIC23.12■■□□□ 1.29
NPHP4O75161 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
NPHP4O75161 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
NPHP4O75161 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
NPHP4O75161 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC23.12■■□□□ 1.29
NPHP4O75161 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
NPHP4O75161 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC23.12■■□□□ 1.29
NPHP4O75161 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC23.12■■□□□ 1.29
NPHP4O75161 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
NPHP4O75161 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
NPHP4O75161 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC23.12■■□□□ 1.29
NPHP4O75161 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
NPHP4O75161 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC23.12■■□□□ 1.29
NPHP4O75161 BRI3BPP1-201ENST00000594224 787 ntBASIC23.12■■□□□ 1.29
NPHP4O75161 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms