Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
CLDN3O15551 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.3■□□□□ 0.52
CLDN3O15551 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.3■□□□□ 0.52
CLDN3O15551 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.3■□□□□ 0.52
CLDN3O15551 RNU1-129P-201ENST00000384064 167 ntBASIC18.3■□□□□ 0.52
CLDN3O15551 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.3■□□□□ 0.52
CLDN3O15551 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.3■□□□□ 0.52
CLDN3O15551 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.3■□□□□ 0.52
CLDN3O15551 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.3■□□□□ 0.52
CLDN3O15551 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.3■□□□□ 0.52
CLDN3O15551 U1.21-201ENST00000580816 167 ntBASIC18.3■□□□□ 0.52
CLDN3O15551 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.3■□□□□ 0.52
CLDN3O15551 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.3■□□□□ 0.52
CLDN3O15551 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.3■□□□□ 0.52
CLDN3O15551 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.3■□□□□ 0.52
CLDN3O15551 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
CLDN3O15551 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.3■□□□□ 0.52
CLDN3O15551 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.3■□□□□ 0.52
CLDN3O15551 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CLDN3O15551 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CLDN3O15551 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.3■□□□□ 0.52
CLDN3O15551 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CLDN3O15551 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.29■□□□□ 0.52
CLDN3O15551 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.29■□□□□ 0.52
CLDN3O15551 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.29■□□□□ 0.52
CLDN3O15551 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CLDN3O15551 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.29■□□□□ 0.52
CLDN3O15551 ACTG1P14-201ENST00000446382 1122 ntBASIC18.29■□□□□ 0.52
CLDN3O15551 YBX1P5-201ENST00000509441 847 ntBASIC18.29■□□□□ 0.52
CLDN3O15551 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.29■□□□□ 0.52
CLDN3O15551 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.29■□□□□ 0.52
CLDN3O15551 AL009183.1-201ENST00000603760 355 ntBASIC18.29■□□□□ 0.52
CLDN3O15551 AL031055.1-201ENST00000606362 631 ntBASIC18.29■□□□□ 0.52
CLDN3O15551 AC006538.3-201ENST00000612495 578 ntBASIC18.29■□□□□ 0.52
CLDN3O15551 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CLDN3O15551 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
CLDN3O15551 ELL2P1-201ENST00000413990 1906 ntBASIC18.29■□□□□ 0.52
CLDN3O15551 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CLDN3O15551 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN3O15551 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.28■□□□□ 0.52
CLDN3O15551 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLDN3O15551 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLDN3O15551 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLDN3O15551 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
CLDN3O15551 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLDN3O15551 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.28■□□□□ 0.52
CLDN3O15551 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CLDN3O15551 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.28■□□□□ 0.52
CLDN3O15551 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLDN3O15551 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLDN3O15551 PMS2P4-201ENST00000412466 1052 ntBASIC18.28■□□□□ 0.52
CLDN3O15551 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.28■□□□□ 0.52
CLDN3O15551 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CLDN3O15551 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLDN3O15551 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.28■□□□□ 0.52
CLDN3O15551 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
CLDN3O15551 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.28■□□□□ 0.52
CLDN3O15551 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.28■□□□□ 0.52
CLDN3O15551 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.28■□□□□ 0.52
CLDN3O15551 MIR4469-201ENST00000583919 79 ntBASIC18.28■□□□□ 0.52
CLDN3O15551 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.28■□□□□ 0.52
CLDN3O15551 AC139530.3-201ENST00000620344 690 ntBASIC18.28■□□□□ 0.52
CLDN3O15551 AC055717.3-201ENST00000622967 595 ntBASIC18.28■□□□□ 0.52
CLDN3O15551 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.28■□□□□ 0.52
CLDN3O15551 AC092902.6-201ENST00000641783 218 ntBASIC18.28■□□□□ 0.52
CLDN3O15551 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.28■□□□□ 0.52
CLDN3O15551 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CLDN3O15551 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLDN3O15551 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLDN3O15551 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CLDN3O15551 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CLDN3O15551 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC18.28■□□□□ 0.52
CLDN3O15551 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLDN3O15551 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms