Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.77■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.77■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.77■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 FAM58DP-201ENST00000428076 619 ntBASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 AP001059.3-201ENST00000619053 235 ntBASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 LETM1P2-201ENST00000597330 2178 ntBASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 AC015911.4-201ENST00000588022 1070 ntBASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 AC084121.4-201ENST00000641598 221 ntBASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 AF228730.8-201ENST00000642140 221 ntBASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms