Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
VPS9D1Q9Y2B5 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 AL353732.1-201ENST00000569618 1459 ntBASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 APOBEC3H-202ENST00000401756 1023 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 RN7SL510P-201ENST00000581311 263 ntBASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 TP73-AS1-207ENST00000624167 988 ntBASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 AC099398.1-201ENST00000567919 2776 ntBASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
VPS9D1Q9Y2B5 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 IGHV3-65-201ENST00000523210 341 ntBASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS9D1Q9Y2B5 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 SULT1A1-211ENST00000569554 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 AL109935.1-201ENST00000413249 473 ntTSL 3 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 SLC25A6P2-201ENST00000497974 877 ntBASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms