Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL12A1Q99715 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL12A1Q99715 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL12A1Q99715 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL12A1Q99715 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC14.48□□□□□ -0.09
COL12A1Q99715 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL12A1Q99715 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL12A1Q99715 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL12A1Q99715 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL12A1Q99715 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.48□□□□□ -0.09
COL12A1Q99715 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 FAM220BP-201ENST00000377689 816 ntBASIC14.47□□□□□ -0.09
COL12A1Q99715 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.47□□□□□ -0.09
COL12A1Q99715 AC114501.2-201ENST00000439631 535 ntBASIC14.47□□□□□ -0.09
COL12A1Q99715 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC14.47□□□□□ -0.09
COL12A1Q99715 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.47□□□□□ -0.09
COL12A1Q99715 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC14.47□□□□□ -0.09
COL12A1Q99715 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC14.47□□□□□ -0.09
COL12A1Q99715 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC14.47□□□□□ -0.09
COL12A1Q99715 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC14.47□□□□□ -0.09
COL12A1Q99715 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 AC091046.1-201ENST00000331871 207 ntBASIC14.47□□□□□ -0.09
COL12A1Q99715 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
COL12A1Q99715 RN7SL828P-201ENST00000607615 303 ntBASIC14.47□□□□□ -0.09
COL12A1Q99715 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC14.47□□□□□ -0.09
COL12A1Q99715 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC14.47□□□□□ -0.09
COL12A1Q99715 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC14.47□□□□□ -0.09
COL12A1Q99715 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC14.47□□□□□ -0.09
COL12A1Q99715 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.47□□□□□ -0.09
COL12A1Q99715 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC14.47□□□□□ -0.09
COL12A1Q99715 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
COL12A1Q99715 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.47□□□□□ -0.09
COL12A1Q99715 AKR7A2P1-201ENST00000460134 915 ntBASIC14.47□□□□□ -0.09
COL12A1Q99715 AC233724.13-201ENST00000598383 410 ntBASIC14.47□□□□□ -0.09
COL12A1Q99715 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL12A1Q99715 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC14.47□□□□□ -0.09
COL12A1Q99715 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC14.47□□□□□ -0.09
COL12A1Q99715 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.46□□□□□ -0.09
COL12A1Q99715 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC14.46□□□□□ -0.09
COL12A1Q99715 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC14.46□□□□□ -0.09
COL12A1Q99715 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL12A1Q99715 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL12A1Q99715 MEP1AP4-201ENST00000423244 1087 ntBASIC14.46□□□□□ -0.09
COL12A1Q99715 KRT43P-201ENST00000434019 910 ntBASIC14.46□□□□□ -0.09
COL12A1Q99715 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
COL12A1Q99715 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL12A1Q99715 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL12A1Q99715 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL12A1Q99715 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.46□□□□□ -0.09
COL12A1Q99715 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL12A1Q99715 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL12A1Q99715 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL12A1Q99715 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL12A1Q99715 AC234644.1-201ENST00000406065 370 ntBASIC14.46□□□□□ -0.09
COL12A1Q99715 EIF4HP1-201ENST00000453115 687 ntBASIC14.46□□□□□ -0.09
COL12A1Q99715 FAM86HP-204ENST00000513466 959 ntBASIC14.46□□□□□ -0.09
COL12A1Q99715 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.46□□□□□ -0.09
COL12A1Q99715 AL512361.1-201ENST00000554200 418 ntBASIC14.46□□□□□ -0.09
COL12A1Q99715 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC14.46□□□□□ -0.09
COL12A1Q99715 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC14.46□□□□□ -0.09
COL12A1Q99715 AC020765.3-201ENST00000613051 740 ntBASIC14.46□□□□□ -0.09
COL12A1Q99715 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.46□□□□□ -0.1
COL12A1Q99715 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
COL12A1Q99715 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC14.46□□□□□ -0.1
COL12A1Q99715 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL12A1Q99715 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
COL12A1Q99715 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL12A1Q99715 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC14.46□□□□□ -0.1
COL12A1Q99715 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL12A1Q99715 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC14.45□□□□□ -0.1
COL12A1Q99715 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL12A1Q99715 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.45□□□□□ -0.1
COL12A1Q99715 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.45□□□□□ -0.1
COL12A1Q99715 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.45□□□□□ -0.1
COL12A1Q99715 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL12A1Q99715 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
COL12A1Q99715 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC14.45□□□□□ -0.1
COL12A1Q99715 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC14.45□□□□□ -0.1
COL12A1Q99715 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
COL12A1Q99715 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC14.45□□□□□ -0.1
COL12A1Q99715 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL12A1Q99715 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL12A1Q99715 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
COL12A1Q99715 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms