Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1AQ8TE12 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 NOC2LP2-201ENST00000407594 1944 ntBASIC16.31■□□□□ 0.2
LMX1AQ8TE12 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 TUBB8P12-201ENST00000308911 1335 ntBASIC16.31■□□□□ 0.2
LMX1AQ8TE12 TUBB7P-202ENST00000428444 1305 ntBASIC16.31■□□□□ 0.2
LMX1AQ8TE12 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 TUBB8P7-204ENST00000567960 1332 ntBASIC16.31■□□□□ 0.2
LMX1AQ8TE12 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.31■□□□□ 0.2
LMX1AQ8TE12 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 AL390754.1-201ENST00000619088 582 ntBASIC16.31■□□□□ 0.2
LMX1AQ8TE12 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1AQ8TE12 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 AC067852.2-201ENST00000590513 2313 ntBASIC16.3■□□□□ 0.2
LMX1AQ8TE12 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 AC092053.1-201ENST00000605787 1936 ntBASIC16.3■□□□□ 0.2
LMX1AQ8TE12 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms