Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 CALY-203ENST00000368558 825 ntTSL 5 BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 AL671277.1-201ENST00000429656 993 ntBASIC18.24■□□□□ 0.51
VPS52Q8N1B4 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 AC026120.1-201ENST00000611536 926 ntBASIC18.24■□□□□ 0.51
VPS52Q8N1B4 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 LINC00304-203ENST00000565008 1864 ntBASIC18.24■□□□□ 0.51
VPS52Q8N1B4 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS52Q8N1B4 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 AL138688.1-201ENST00000624851 1594 ntBASIC18.23■□□□□ 0.51
VPS52Q8N1B4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.23■□□□□ 0.51
VPS52Q8N1B4 AL355306.1-201ENST00000415580 579 ntBASIC18.23■□□□□ 0.51
VPS52Q8N1B4 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 AC140658.5-201ENST00000438532 169 ntBASIC18.23■□□□□ 0.51
VPS52Q8N1B4 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 AC093520.2-201ENST00000561830 333 ntBASIC18.23■□□□□ 0.51
VPS52Q8N1B4 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 AL096865.1-201ENST00000606796 927 ntBASIC18.23■□□□□ 0.51
VPS52Q8N1B4 AC099522.2-201ENST00000607001 744 ntBASIC18.23■□□□□ 0.51
VPS52Q8N1B4 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 AL645728.2-201ENST00000641974 660 ntBASIC18.23■□□□□ 0.51
VPS52Q8N1B4 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS52Q8N1B4 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 AL627223.1-201ENST00000416693 442 ntBASIC18.22■□□□□ 0.51
VPS52Q8N1B4 BCRP1-201ENST00000444246 691 ntBASIC18.22■□□□□ 0.51
VPS52Q8N1B4 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 FAM86C2P-203ENST00000528684 1004 ntBASIC18.22■□□□□ 0.51
VPS52Q8N1B4 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS52Q8N1B4 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms