Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 HARS-204ENST00000438307 1789 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 NBPF21P-201ENST00000425093 1451 ntBASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 AC138969.2-201ENST00000532739 9932 ntBASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28AQ8IWP9 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 AL139385.1-201ENST00000611744 3272 ntBASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 AMT-206ENST00000458307 1860 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 AL356585.2-201ENST00000625078 2396 ntBASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 LINC02012-201ENST00000608206 1725 ntBASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 C1QL1P1-201ENST00000568105 661 ntBASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 AC118758.2-201ENST00000614242 2813 ntBASIC14.1□□□□□ -0.15
CCDC28AQ8IWP9 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 KRT8P11-201ENST00000409686 1436 ntBASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 CFL2-205ENST00000555765 632 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28AQ8IWP9 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms