Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP4O75161 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
NPHP4O75161 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
NPHP4O75161 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
NPHP4O75161 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP4O75161 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP4O75161 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC23.23■■□□□ 1.31
NPHP4O75161 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP4O75161 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
NPHP4O75161 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP4O75161 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP4O75161 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP4O75161 AC133963.1-201ENST00000504166 1679 ntBASIC23.23■■□□□ 1.31
NPHP4O75161 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP4O75161 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP4O75161 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP4O75161 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC23.23■■□□□ 1.31
NPHP4O75161 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC23.23■■□□□ 1.31
NPHP4O75161 GZMB-202ENST00000382540 816 ntTSL 5 BASIC23.23■■□□□ 1.31
NPHP4O75161 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
NPHP4O75161 NME4-207ENST00000450036 985 ntTSL 3 BASIC23.23■■□□□ 1.31
NPHP4O75161 TDH-203ENST00000531764 1110 ntBASIC23.23■■□□□ 1.31
NPHP4O75161 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP4O75161 SUOX-214ENST00000551841 906 ntTSL 3 BASIC23.23■■□□□ 1.31
NPHP4O75161 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC23.23■■□□□ 1.31
NPHP4O75161 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC23.23■■□□□ 1.31
NPHP4O75161 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP4O75161 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP4O75161 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP4O75161 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
NPHP4O75161 KRT8P22-201ENST00000562317 1415 ntBASIC23.22■■□□□ 1.31
NPHP4O75161 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC23.22■■□□□ 1.31
NPHP4O75161 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP4O75161 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
NPHP4O75161 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC23.22■■□□□ 1.31
NPHP4O75161 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP4O75161 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP4O75161 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC23.22■■□□□ 1.31
NPHP4O75161 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
NPHP4O75161 AC006033.1-201ENST00000440505 426 ntBASIC23.22■■□□□ 1.31
NPHP4O75161 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP4O75161 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC23.22■■□□□ 1.31
NPHP4O75161 AL671710.1-201ENST00000610245 2349 ntBASIC23.22■■□□□ 1.31
NPHP4O75161 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC23.22■■□□□ 1.31
NPHP4O75161 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP4O75161 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP4O75161 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
NPHP4O75161 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
NPHP4O75161 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC23.21■■□□□ 1.31
NPHP4O75161 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC23.21■■□□□ 1.31
NPHP4O75161 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC23.21■■□□□ 1.31
NPHP4O75161 VMO1-203ENST00000416307 712 ntTSL 2 BASIC23.21■■□□□ 1.31
NPHP4O75161 BCRP2-202ENST00000447763 634 ntBASIC23.21■■□□□ 1.31
NPHP4O75161 PTK7-212ENST00000476760 902 ntTSL 2 BASIC23.21■■□□□ 1.31
NPHP4O75161 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC23.21■■□□□ 1.31
NPHP4O75161 BCRP6-201ENST00000510112 632 ntBASIC23.21■■□□□ 1.31
NPHP4O75161 BCRP7-201ENST00000511549 544 ntBASIC23.21■■□□□ 1.31
NPHP4O75161 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC23.21■■□□□ 1.31
NPHP4O75161 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC23.21■■□□□ 1.31
NPHP4O75161 AL021578.1-201ENST00000613646 709 ntBASIC23.21■■□□□ 1.31
NPHP4O75161 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC23.21■■□□□ 1.31
NPHP4O75161 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NPHP4O75161 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC23.21■■□□□ 1.31
NPHP4O75161 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
NPHP4O75161 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.31
NPHP4O75161 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.31
NPHP4O75161 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
NPHP4O75161 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC23.2■■□□□ 1.31
NPHP4O75161 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP4O75161 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
NPHP4O75161 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC23.2■■□□□ 1.3
NPHP4O75161 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP4O75161 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP4O75161 AGER-203ENST00000375065 665 ntTSL 2 BASIC23.2■■□□□ 1.3
NPHP4O75161 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC23.2■■□□□ 1.3
NPHP4O75161 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP4O75161 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC23.2■■□□□ 1.3
NPHP4O75161 IGHJ2P-201ENST00000454480 60 ntBASIC23.2■■□□□ 1.3
NPHP4O75161 KRT8P13-201ENST00000463294 1010 ntBASIC23.2■■□□□ 1.3
NPHP4O75161 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC23.2■■□□□ 1.3
NPHP4O75161 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC23.2■■□□□ 1.3
NPHP4O75161 HNRNPA1P13-201ENST00000510646 963 ntBASIC23.2■■□□□ 1.3
NPHP4O75161 TIMM17BP1-201ENST00000545713 516 ntBASIC23.2■■□□□ 1.3
NPHP4O75161 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP4O75161 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC23.2■■□□□ 1.3
NPHP4O75161 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC23.2■■□□□ 1.3
NPHP4O75161 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP4O75161 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC23.2■■□□□ 1.3
NPHP4O75161 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP4O75161 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP4O75161 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC23.19■■□□□ 1.3
NPHP4O75161 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP4O75161 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC23.19■■□□□ 1.3
NPHP4O75161 RPL28-203ENST00000428193 573 ntTSL 2 BASIC23.19■■□□□ 1.3
NPHP4O75161 RPL13AP20-201ENST00000459725 609 ntBASIC23.19■■□□□ 1.3
NPHP4O75161 RN7SL399P-201ENST00000471648 279 ntBASIC23.19■■□□□ 1.3
NPHP4O75161 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC23.19■■□□□ 1.3
NPHP4O75161 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC23.19■■□□□ 1.3
NPHP4O75161 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms