Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 AC067863.1-201ENST00000494933 530 ntBASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 AC022145.2-201ENST00000598203 171 ntBASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDZRN3Q9UPQ7 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 RNA5SP421-201ENST00000516864 134 ntBASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDZRN3Q9UPQ7 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 MYCLP1-201ENST00000372451 1075 ntBASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 WBP2-203ENST00000433525 928 ntTSL 2 BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 AC112191.1-201ENST00000523689 701 ntBASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 AC190387.1-201ENST00000551683 408 ntBASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 LINC00628-201ENST00000628516 1289 ntBASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
PDZRN3Q9UPQ7 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 PCDHA14-201ENST00000506751 2298 ntBASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 FAM86GP-201ENST00000448322 971 ntBASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 AC138761.1-201ENST00000584393 385 ntBASIC21.66■■□□□ 1.06
PDZRN3Q9UPQ7 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms