Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
IFT140Q96RY7 AC116353.5-201ENST00000638148 1699 ntBASIC27.33■■□□□ 1.96
IFT140Q96RY7 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC27.33■■□□□ 1.96
IFT140Q96RY7 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
IFT140Q96RY7 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC27.33■■□□□ 1.96
IFT140Q96RY7 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC27.32■■□□□ 1.96
IFT140Q96RY7 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
IFT140Q96RY7 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
IFT140Q96RY7 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
IFT140Q96RY7 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
IFT140Q96RY7 IGHJ2P-201ENST00000454480 60 ntBASIC27.32■■□□□ 1.96
IFT140Q96RY7 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC27.32■■□□□ 1.96
IFT140Q96RY7 RN7SL399P-201ENST00000471648 279 ntBASIC27.32■■□□□ 1.96
IFT140Q96RY7 DUX4L45-201ENST00000566406 1057 ntBASIC27.32■■□□□ 1.96
IFT140Q96RY7 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
IFT140Q96RY7 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
IFT140Q96RY7 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
IFT140Q96RY7 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
IFT140Q96RY7 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
IFT140Q96RY7 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
IFT140Q96RY7 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC27.32■■□□□ 1.96
IFT140Q96RY7 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
IFT140Q96RY7 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC27.32■■□□□ 1.96
IFT140Q96RY7 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
IFT140Q96RY7 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
IFT140Q96RY7 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
IFT140Q96RY7 APOA1-205ENST00000375329 927 ntTSL 2 BASIC27.32■■□□□ 1.96
IFT140Q96RY7 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC27.32■■□□□ 1.96
IFT140Q96RY7 CALR4P-201ENST00000431943 946 ntBASIC27.32■■□□□ 1.96
IFT140Q96RY7 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC27.32■■□□□ 1.96
IFT140Q96RY7 YBX1P6-201ENST00000442962 1002 ntBASIC27.32■■□□□ 1.96
IFT140Q96RY7 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC27.32■■□□□ 1.96
IFT140Q96RY7 HNRNPA1P13-201ENST00000510646 963 ntBASIC27.32■■□□□ 1.96
IFT140Q96RY7 FAM86HP-204ENST00000513466 959 ntBASIC27.32■■□□□ 1.96
IFT140Q96RY7 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC27.32■■□□□ 1.96
IFT140Q96RY7 AL021578.1-201ENST00000613646 709 ntBASIC27.32■■□□□ 1.96
IFT140Q96RY7 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
IFT140Q96RY7 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
IFT140Q96RY7 TP73-213ENST00000604479 1623 ntTSL 5 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 AMT-232ENST00000636199 1546 ntTSL 5 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
IFT140Q96RY7 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
IFT140Q96RY7 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
IFT140Q96RY7 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
IFT140Q96RY7 RPL28-203ENST00000428193 573 ntTSL 2 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 RPL13AP20-201ENST00000459725 609 ntBASIC27.31■■□□□ 1.96
IFT140Q96RY7 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 AP001889.1-201ENST00000525414 633 ntBASIC27.31■■□□□ 1.96
IFT140Q96RY7 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
IFT140Q96RY7 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 RPL28-207ENST00000558815 616 ntTSL 2 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 BRI3BPP1-201ENST00000594224 787 ntBASIC27.31■■□□□ 1.96
IFT140Q96RY7 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC27.31■■□□□ 1.96
IFT140Q96RY7 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
IFT140Q96RY7 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC27.31■■□□□ 1.96
IFT140Q96RY7 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
IFT140Q96RY7 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC27.3■■□□□ 1.96
IFT140Q96RY7 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
IFT140Q96RY7 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
IFT140Q96RY7 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC27.3■■□□□ 1.96
IFT140Q96RY7 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
IFT140Q96RY7 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
IFT140Q96RY7 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
IFT140Q96RY7 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
IFT140Q96RY7 MIR663B-201ENST00000408361 115 ntBASIC27.3■■□□□ 1.96
IFT140Q96RY7 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC27.3■■□□□ 1.96
IFT140Q96RY7 TIMM17BP1-201ENST00000545713 516 ntBASIC27.3■■□□□ 1.96
IFT140Q96RY7 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
IFT140Q96RY7 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC27.3■■□□□ 1.96
IFT140Q96RY7 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC27.3■■□□□ 1.96
IFT140Q96RY7 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC27.3■■□□□ 1.96
IFT140Q96RY7 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC27.3■■□□□ 1.96
IFT140Q96RY7 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
IFT140Q96RY7 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
IFT140Q96RY7 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
IFT140Q96RY7 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
IFT140Q96RY7 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
IFT140Q96RY7 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
IFT140Q96RY7 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
IFT140Q96RY7 BCRP2-202ENST00000447763 634 ntBASIC27.29■■□□□ 1.96
IFT140Q96RY7 AL139010.1-201ENST00000454878 894 ntBASIC27.29■■□□□ 1.96
IFT140Q96RY7 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC27.29■■□□□ 1.96
IFT140Q96RY7 BCRP6-201ENST00000510112 632 ntBASIC27.29■■□□□ 1.96
IFT140Q96RY7 BCRP7-201ENST00000511549 544 ntBASIC27.29■■□□□ 1.96
IFT140Q96RY7 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC27.29■■□□□ 1.96
IFT140Q96RY7 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC27.29■■□□□ 1.96
IFT140Q96RY7 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC27.29■■□□□ 1.96
IFT140Q96RY7 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC27.29■■□□□ 1.96
IFT140Q96RY7 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC27.29■■□□□ 1.96
IFT140Q96RY7 AL355312.1-201ENST00000407115 2176 ntBASIC27.29■■□□□ 1.96
IFT140Q96RY7 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
IFT140Q96RY7 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms