Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
RXRBP28702 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC21.69■■□□□ 1.06
RXRBP28702 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RXRBP28702 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC21.68■■□□□ 1.06
RXRBP28702 AC234644.1-201ENST00000406065 370 ntBASIC21.68■■□□□ 1.06
RXRBP28702 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC21.68■■□□□ 1.06
RXRBP28702 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RXRBP28702 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC21.68■■□□□ 1.06
RXRBP28702 IMP3P2-201ENST00000489760 475 ntBASIC21.68■■□□□ 1.06
RXRBP28702 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC21.68■■□□□ 1.06
RXRBP28702 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC21.68■■□□□ 1.06
RXRBP28702 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC21.68■■□□□ 1.06
RXRBP28702 HADH-212ENST00000638621 741 ntTSL 5 BASIC21.68■■□□□ 1.06
RXRBP28702 HLA-C-210ENST00000640219 976 ntBASIC21.68■■□□□ 1.06
RXRBP28702 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RXRBP28702 HNRNPA1P48-201ENST00000562726 1377 ntBASIC21.68■■□□□ 1.06
RXRBP28702 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
RXRBP28702 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC21.68■■□□□ 1.06
RXRBP28702 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC21.68■■□□□ 1.06
RXRBP28702 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.68■■□□□ 1.06
RXRBP28702 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RXRBP28702 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
RXRBP28702 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RXRBP28702 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.68■■□□□ 1.06
RXRBP28702 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RXRBP28702 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
RXRBP28702 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RXRBP28702 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
RXRBP28702 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RXRBP28702 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
RXRBP28702 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RXRBP28702 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RXRBP28702 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
RXRBP28702 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RXRBP28702 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RXRBP28702 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RXRBP28702 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RXRBP28702 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
RXRBP28702 MPV17-204ENST00000399052 749 ntTSL 4 BASIC21.67■■□□□ 1.06
RXRBP28702 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
RXRBP28702 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC21.67■■□□□ 1.06
RXRBP28702 Z93015.1-201ENST00000451718 390 ntBASIC21.67■■□□□ 1.06
RXRBP28702 AL591846.1-201ENST00000451736 433 ntBASIC21.67■■□□□ 1.06
RXRBP28702 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC21.67■■□□□ 1.06
RXRBP28702 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC21.67■■□□□ 1.06
RXRBP28702 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC21.67■■□□□ 1.06
RXRBP28702 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
RXRBP28702 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC21.67■■□□□ 1.06
RXRBP28702 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RXRBP28702 ENPP7P5-201ENST00000541031 1031 ntBASIC21.67■■□□□ 1.06
RXRBP28702 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC21.67■■□□□ 1.06
RXRBP28702 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC21.67■■□□□ 1.06
RXRBP28702 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
RXRBP28702 KLK3-211ENST00000597483 810 ntTSL 2 BASIC21.67■■□□□ 1.06
RXRBP28702 AC244669.2-201ENST00000612320 853 ntBASIC21.67■■□□□ 1.06
RXRBP28702 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RXRBP28702 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RXRBP28702 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RXRBP28702 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RXRBP28702 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21.67■■□□□ 1.06
RXRBP28702 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RXRBP28702 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RXRBP28702 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RXRBP28702 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RXRBP28702 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC21.66■■□□□ 1.06
RXRBP28702 HARS-202ENST00000415192 1401 ntTSL 2 BASIC21.66■■□□□ 1.06
RXRBP28702 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.66■■□□□ 1.06
RXRBP28702 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC21.66■■□□□ 1.06
RXRBP28702 AC007969.1-201ENST00000433675 447 ntBASIC21.66■■□□□ 1.06
RXRBP28702 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC21.66■■□□□ 1.06
RXRBP28702 AC008267.1-201ENST00000474858 1069 ntBASIC21.66■■□□□ 1.06
RXRBP28702 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC21.66■■□□□ 1.06
RXRBP28702 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RXRBP28702 AL359711.2-201ENST00000563105 872 ntBASIC21.66■■□□□ 1.06
RXRBP28702 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC21.66■■□□□ 1.06
RXRBP28702 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RXRBP28702 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RXRBP28702 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RXRBP28702 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC21.66■■□□□ 1.06
RXRBP28702 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RXRBP28702 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RXRBP28702 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
RXRBP28702 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RXRBP28702 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC21.65■■□□□ 1.06
RXRBP28702 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RXRBP28702 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RXRBP28702 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RXRBP28702 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RXRBP28702 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
RXRBP28702 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RXRBP28702 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RXRBP28702 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RXRBP28702 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
RXRBP28702 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
RXRBP28702 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
RXRBP28702 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
RXRBP28702 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RXRBP28702 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC21.65■■□□□ 1.06
RXRBP28702 AC036164.1-201ENST00000570544 333 ntBASIC21.65■■□□□ 1.06
RXRBP28702 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms