Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CLDN9O95484 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.3■□□□□ 0.2
CLDN9O95484 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CLDN9O95484 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.3■□□□□ 0.2
CLDN9O95484 AC002310.6-201ENST00000624451 1377 ntBASIC16.3■□□□□ 0.2
CLDN9O95484 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CLDN9O95484 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.3■□□□□ 0.2
CLDN9O95484 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.3■□□□□ 0.2
CLDN9O95484 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.3■□□□□ 0.2
CLDN9O95484 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.3■□□□□ 0.2
CLDN9O95484 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.3■□□□□ 0.2
CLDN9O95484 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.3■□□□□ 0.2
CLDN9O95484 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.3■□□□□ 0.2
CLDN9O95484 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.3■□□□□ 0.2
CLDN9O95484 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.3■□□□□ 0.2
CLDN9O95484 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CLDN9O95484 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.3■□□□□ 0.2
CLDN9O95484 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
CLDN9O95484 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CLDN9O95484 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.3■□□□□ 0.2
CLDN9O95484 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 AC006449.5-201ENST00000610658 2098 ntBASIC16.3■□□□□ 0.2
CLDN9O95484 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CLDN9O95484 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CLDN9O95484 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CLDN9O95484 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.29■□□□□ 0.2
CLDN9O95484 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.29■□□□□ 0.2
CLDN9O95484 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.29■□□□□ 0.2
CLDN9O95484 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.29■□□□□ 0.2
CLDN9O95484 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.29■□□□□ 0.2
CLDN9O95484 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.29■□□□□ 0.2
CLDN9O95484 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.29■□□□□ 0.2
CLDN9O95484 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 AC073648.2-201ENST00000510116 352 ntBASIC16.29■□□□□ 0.2
CLDN9O95484 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.29■□□□□ 0.2
CLDN9O95484 OR7E14P-202ENST00000530490 1290 ntBASIC16.29■□□□□ 0.2
CLDN9O95484 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.29■□□□□ 0.2
CLDN9O95484 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.29■□□□□ 0.2
CLDN9O95484 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CLDN9O95484 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.29■□□□□ 0.2
CLDN9O95484 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.29■□□□□ 0.2
CLDN9O95484 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.29■□□□□ 0.2
CLDN9O95484 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CLDN9O95484 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.29■□□□□ 0.2
CLDN9O95484 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.29■□□□□ 0.2
CLDN9O95484 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.29■□□□□ 0.2
CLDN9O95484 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.29■□□□□ 0.2
CLDN9O95484 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CLDN9O95484 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
CLDN9O95484 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLDN9O95484 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLDN9O95484 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
CLDN9O95484 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLDN9O95484 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLDN9O95484 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLDN9O95484 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CLDN9O95484 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLDN9O95484 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CLDN9O95484 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLDN9O95484 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
CLDN9O95484 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLDN9O95484 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.28■□□□□ 0.2
CLDN9O95484 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLDN9O95484 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLDN9O95484 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLDN9O95484 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLDN9O95484 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLDN9O95484 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLDN9O95484 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.28■□□□□ 0.2
CLDN9O95484 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLDN9O95484 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.28■□□□□ 0.2
CLDN9O95484 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.28■□□□□ 0.2
CLDN9O95484 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.28■□□□□ 0.2
CLDN9O95484 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.28■□□□□ 0.2
CLDN9O95484 MPDU1-223ENST00000582151 728 ntBASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms