Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 NME6-203ENST00000415644 849 ntTSL 2 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZNF541Q9H0D2 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 AC009113.1-201ENST00000570267 2443 ntBASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 ACTBP11-201ENST00000436287 1126 ntBASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 PFAS-212ENST00000625942 396 ntTSL 5 BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF541Q9H0D2 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 AL021920.2-201ENST00000624828 1351 ntBASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 SERBP1P3-201ENST00000459980 809 ntBASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 AC093726.1-201ENST00000608064 963 ntBASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 AL033527.5-202ENST00000641632 1098 ntBASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 AC133963.1-201ENST00000504166 1679 ntBASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 KRT8P44-201ENST00000441609 1350 ntBASIC19.92■□□□□ 0.78
ZNF541Q9H0D2 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 AC093525.9-201ENST00000624961 1746 ntBASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 IMPDH1P4-201ENST00000445028 1534 ntBASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC19.91■□□□□ 0.78
ZNF541Q9H0D2 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms