Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 GID4-202ENST00000376345 1391 ntTSL 3 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00477Q96M19 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC12.68□□□□□ -0.38
LINC00477Q96M19 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 AC079776.2-201ENST00000641154 1609 ntBASIC12.67□□□□□ -0.38
LINC00477Q96M19 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 BET1L-202ENST00000332865 533 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 AC087388.1-201ENST00000571370 1112 ntBASIC12.67□□□□□ -0.38
LINC00477Q96M19 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 MIR5100-201ENST00000579544 119 ntBASIC12.67□□□□□ -0.38
LINC00477Q96M19 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 AL139011.1-202ENST00000642063 584 ntBASIC12.67□□□□□ -0.38
LINC00477Q96M19 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 KRT8P49-201ENST00000604166 1432 ntBASIC12.67□□□□□ -0.38
LINC00477Q96M19 AC006538.1-201ENST00000567905 1585 ntBASIC12.67□□□□□ -0.38
LINC00477Q96M19 AC092171.3-201ENST00000610122 2651 ntBASIC12.67□□□□□ -0.38
LINC00477Q96M19 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 AC018695.7-201ENST00000624587 2492 ntBASIC12.67□□□□□ -0.38
LINC00477Q96M19 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 WT1-209ENST00000530998 2421 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00477Q96M19 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00477Q96M19 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 AC008894.3-201ENST00000624324 3103 ntBASIC12.66□□□□□ -0.38
LINC00477Q96M19 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms