Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TTC28Q96AY4 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
TTC28Q96AY4 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.81■□□□□ 0.28
TTC28Q96AY4 RN7SL399P-201ENST00000471648 279 ntBASIC16.81■□□□□ 0.28
TTC28Q96AY4 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 PFN2-215ENST00000497148 743 ntTSL 4 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.81■□□□□ 0.28
TTC28Q96AY4 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 AC134698.3-201ENST00000523880 214 ntBASIC16.81■□□□□ 0.28
TTC28Q96AY4 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.81■□□□□ 0.28
TTC28Q96AY4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TTC28Q96AY4 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TTC28Q96AY4 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TTC28Q96AY4 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TTC28Q96AY4 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TTC28Q96AY4 UFM1-202ENST00000379649 846 ntTSL 4 BASIC16.8■□□□□ 0.28
TTC28Q96AY4 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TTC28Q96AY4 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.8■□□□□ 0.28
TTC28Q96AY4 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TTC28Q96AY4 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TTC28Q96AY4 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TTC28Q96AY4 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TTC28Q96AY4 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TTC28Q96AY4 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.8■□□□□ 0.28
TTC28Q96AY4 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TTC28Q96AY4 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TTC28Q96AY4 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TTC28Q96AY4 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.8■□□□□ 0.28
TTC28Q96AY4 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.8■□□□□ 0.28
TTC28Q96AY4 AC005357.2-202ENST00000590507 1060 ntBASIC16.8■□□□□ 0.28
TTC28Q96AY4 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TTC28Q96AY4 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TTC28Q96AY4 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TTC28Q96AY4 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
TTC28Q96AY4 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC16.79■□□□□ 0.28
TTC28Q96AY4 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC16.79■□□□□ 0.28
TTC28Q96AY4 AL442647.2-201ENST00000429864 857 ntBASIC16.79■□□□□ 0.28
TTC28Q96AY4 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.79■□□□□ 0.28
TTC28Q96AY4 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TTC28Q96AY4 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC16.79■□□□□ 0.28
TTC28Q96AY4 TIMM17BP1-201ENST00000545713 516 ntBASIC16.79■□□□□ 0.28
TTC28Q96AY4 KLK3-211ENST00000597483 810 ntTSL 2 BASIC16.79■□□□□ 0.28
TTC28Q96AY4 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.79■□□□□ 0.28
TTC28Q96AY4 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TTC28Q96AY4 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TTC28Q96AY4 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TTC28Q96AY4 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TTC28Q96AY4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TTC28Q96AY4 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TTC28Q96AY4 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TTC28Q96AY4 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TTC28Q96AY4 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TTC28Q96AY4 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.79■□□□□ 0.28
TTC28Q96AY4 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC16.79■□□□□ 0.28
TTC28Q96AY4 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.79■□□□□ 0.28
TTC28Q96AY4 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.79■□□□□ 0.28
TTC28Q96AY4 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.79■□□□□ 0.28
TTC28Q96AY4 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC16.79■□□□□ 0.28
TTC28Q96AY4 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC16.79■□□□□ 0.28
TTC28Q96AY4 AL353726.2-201ENST00000623259 884 ntBASIC16.79■□□□□ 0.28
TTC28Q96AY4 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms