Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
USP53Q70EK8 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
USP53Q70EK8 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP53Q70EK8 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP53Q70EK8 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
USP53Q70EK8 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP53Q70EK8 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP53Q70EK8 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP53Q70EK8 TFAMP1-201ENST00000412727 736 ntBASIC16.31■□□□□ 0.2
USP53Q70EK8 AL592309.1-201ENST00000443127 649 ntBASIC16.31■□□□□ 0.2
USP53Q70EK8 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP53Q70EK8 DUX4L17-201ENST00000557360 1267 ntBASIC16.31■□□□□ 0.2
USP53Q70EK8 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.31■□□□□ 0.2
USP53Q70EK8 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP53Q70EK8 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP53Q70EK8 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.31■□□□□ 0.2
USP53Q70EK8 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
USP53Q70EK8 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP53Q70EK8 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP53Q70EK8 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP53Q70EK8 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
USP53Q70EK8 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.31■□□□□ 0.2
USP53Q70EK8 AC093525.9-201ENST00000624961 1746 ntBASIC16.31■□□□□ 0.2
USP53Q70EK8 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.31■□□□□ 0.2
USP53Q70EK8 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.3■□□□□ 0.2
USP53Q70EK8 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP53Q70EK8 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP53Q70EK8 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.3■□□□□ 0.2
USP53Q70EK8 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USP53Q70EK8 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.3■□□□□ 0.2
USP53Q70EK8 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.3■□□□□ 0.2
USP53Q70EK8 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.3■□□□□ 0.2
USP53Q70EK8 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP53Q70EK8 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
USP53Q70EK8 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USP53Q70EK8 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
USP53Q70EK8 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.3■□□□□ 0.2
USP53Q70EK8 SLC25A1P3-201ENST00000395415 828 ntBASIC16.3■□□□□ 0.2
USP53Q70EK8 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.3■□□□□ 0.2
USP53Q70EK8 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.3■□□□□ 0.2
USP53Q70EK8 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.3■□□□□ 0.2
USP53Q70EK8 AC079140.1-201ENST00000508039 487 ntBASIC16.3■□□□□ 0.2
USP53Q70EK8 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.3■□□□□ 0.2
USP53Q70EK8 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.3■□□□□ 0.2
USP53Q70EK8 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.3■□□□□ 0.2
USP53Q70EK8 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP53Q70EK8 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.3■□□□□ 0.2
USP53Q70EK8 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
USP53Q70EK8 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP53Q70EK8 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.3■□□□□ 0.2
USP53Q70EK8 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.3■□□□□ 0.2
USP53Q70EK8 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP53Q70EK8 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP53Q70EK8 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USP53Q70EK8 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP53Q70EK8 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
USP53Q70EK8 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP53Q70EK8 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP53Q70EK8 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.3■□□□□ 0.2
USP53Q70EK8 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.3■□□□□ 0.2
USP53Q70EK8 EGFEM1P-202ENST00000431685 1563 ntBASIC16.3■□□□□ 0.2
USP53Q70EK8 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.29■□□□□ 0.2
USP53Q70EK8 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
USP53Q70EK8 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.29■□□□□ 0.2
USP53Q70EK8 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
USP53Q70EK8 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
USP53Q70EK8 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
USP53Q70EK8 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
USP53Q70EK8 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.29■□□□□ 0.2
USP53Q70EK8 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
USP53Q70EK8 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
USP53Q70EK8 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.29■□□□□ 0.2
USP53Q70EK8 AL627223.1-201ENST00000416693 442 ntBASIC16.29■□□□□ 0.2
USP53Q70EK8 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.29■□□□□ 0.2
USP53Q70EK8 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.29■□□□□ 0.2
USP53Q70EK8 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.29■□□□□ 0.2
USP53Q70EK8 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.29■□□□□ 0.2
USP53Q70EK8 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.29■□□□□ 0.2
USP53Q70EK8 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.29■□□□□ 0.2
USP53Q70EK8 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.29■□□□□ 0.2
USP53Q70EK8 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP53Q70EK8 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.29■□□□□ 0.2
USP53Q70EK8 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms