Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.54■□□□□ 0.4
EPHB3P54753 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.54■□□□□ 0.4
EPHB3P54753 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 MIR346-201ENST00000362234 95 ntBASIC17.54■□□□□ 0.4
EPHB3P54753 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.54■□□□□ 0.4
EPHB3P54753 AC107890.1-201ENST00000422478 521 ntBASIC17.54■□□□□ 0.4
EPHB3P54753 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.54■□□□□ 0.4
EPHB3P54753 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.54■□□□□ 0.4
EPHB3P54753 SPDYE14P-201ENST00000442619 822 ntBASIC17.54■□□□□ 0.4
EPHB3P54753 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.54■□□□□ 0.4
EPHB3P54753 AC125807.1-201ENST00000483097 614 ntBASIC17.54■□□□□ 0.4
EPHB3P54753 AC093214.1-201ENST00000511688 1107 ntBASIC17.54■□□□□ 0.4
EPHB3P54753 ALG1L8P-201ENST00000533887 760 ntBASIC17.54■□□□□ 0.4
EPHB3P54753 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.54■□□□□ 0.4
EPHB3P54753 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.54■□□□□ 0.4
EPHB3P54753 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.54■□□□□ 0.4
EPHB3P54753 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
EPHB3P54753 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.54■□□□□ 0.4
EPHB3P54753 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
EPHB3P54753 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
EPHB3P54753 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
EPHB3P54753 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
EPHB3P54753 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
EPHB3P54753 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.53■□□□□ 0.4
EPHB3P54753 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.53■□□□□ 0.4
EPHB3P54753 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 AC067852.2-201ENST00000590513 2313 ntBASIC17.53■□□□□ 0.4
EPHB3P54753 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
EPHB3P54753 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.53■□□□□ 0.4
EPHB3P54753 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.53■□□□□ 0.4
EPHB3P54753 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.53■□□□□ 0.4
EPHB3P54753 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.53■□□□□ 0.4
EPHB3P54753 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.53■□□□□ 0.4
EPHB3P54753 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 MIR943-201ENST00000401286 94 ntBASIC17.53■□□□□ 0.4
EPHB3P54753 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.53■□□□□ 0.4
EPHB3P54753 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.53■□□□□ 0.4
EPHB3P54753 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.53■□□□□ 0.4
EPHB3P54753 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.53■□□□□ 0.4
EPHB3P54753 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.53■□□□□ 0.4
EPHB3P54753 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
EPHB3P54753 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
EPHB3P54753 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
EPHB3P54753 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
EPHB3P54753 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
EPHB3P54753 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
EPHB3P54753 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
EPHB3P54753 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.52■□□□□ 0.4
EPHB3P54753 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
EPHB3P54753 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
EPHB3P54753 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
EPHB3P54753 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.52■□□□□ 0.4
EPHB3P54753 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.52■□□□□ 0.4
EPHB3P54753 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
EPHB3P54753 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
EPHB3P54753 LINC00895-201ENST00000629028 1637 ntBASIC17.52■□□□□ 0.4
EPHB3P54753 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
EPHB3P54753 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
EPHB3P54753 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.52■□□□□ 0.4
EPHB3P54753 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
EPHB3P54753 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
EPHB3P54753 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.52■□□□□ 0.4
EPHB3P54753 AC055876.3-201ENST00000431496 288 ntBASIC17.52■□□□□ 0.4
EPHB3P54753 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.52■□□□□ 0.4
EPHB3P54753 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.52■□□□□ 0.4
EPHB3P54753 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.52■□□□□ 0.4
EPHB3P54753 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
EPHB3P54753 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.52■□□□□ 0.4
EPHB3P54753 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms