Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
BRCA1P38398 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BRCA1P38398 AL442647.2-201ENST00000429864 857 ntBASIC20.13■□□□□ 0.81
BRCA1P38398 FTH1P14-201ENST00000482930 551 ntBASIC20.13■□□□□ 0.81
BRCA1P38398 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
BRCA1P38398 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC20.13■□□□□ 0.81
BRCA1P38398 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRCA1P38398 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
BRCA1P38398 SNX33P1-201ENST00000592116 1762 ntBASIC20.13■□□□□ 0.81
BRCA1P38398 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.13■□□□□ 0.81
BRCA1P38398 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.13■□□□□ 0.81
BRCA1P38398 AL671710.1-201ENST00000610245 2349 ntBASIC20.13■□□□□ 0.81
BRCA1P38398 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
BRCA1P38398 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRCA1P38398 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRCA1P38398 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC20.13■□□□□ 0.81
BRCA1P38398 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
BRCA1P38398 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
BRCA1P38398 AC093503.3-201ENST00000624917 2352 ntBASIC20.13■□□□□ 0.81
BRCA1P38398 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
BRCA1P38398 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRCA1P38398 DPM2-202ENST00000373110 738 ntTSL 2 BASIC20.13■□□□□ 0.81
BRCA1P38398 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRCA1P38398 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC20.13■□□□□ 0.81
BRCA1P38398 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
BRCA1P38398 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC20.13■□□□□ 0.81
BRCA1P38398 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC20.13■□□□□ 0.81
BRCA1P38398 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC20.13■□□□□ 0.81
BRCA1P38398 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC20.13■□□□□ 0.81
BRCA1P38398 DUX4L45-201ENST00000566406 1057 ntBASIC20.13■□□□□ 0.81
BRCA1P38398 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC20.13■□□□□ 0.81
BRCA1P38398 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC20.13■□□□□ 0.81
BRCA1P38398 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
BRCA1P38398 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRCA1P38398 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.13■□□□□ 0.81
BRCA1P38398 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRCA1P38398 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRCA1P38398 AMT-232ENST00000636199 1546 ntTSL 5 BASIC20.13■□□□□ 0.81
BRCA1P38398 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRCA1P38398 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRCA1P38398 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BRCA1P38398 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRCA1P38398 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRCA1P38398 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC20.12■□□□□ 0.81
BRCA1P38398 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.12■□□□□ 0.81
BRCA1P38398 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.12■□□□□ 0.81
BRCA1P38398 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.12■□□□□ 0.81
BRCA1P38398 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
BRCA1P38398 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
BRCA1P38398 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRCA1P38398 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRCA1P38398 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRCA1P38398 GPAA1P2-201ENST00000417923 928 ntBASIC20.12■□□□□ 0.81
BRCA1P38398 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
BRCA1P38398 AC006033.1-201ENST00000440505 426 ntBASIC20.12■□□□□ 0.81
BRCA1P38398 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
BRCA1P38398 BRI3BPP1-201ENST00000594224 787 ntBASIC20.12■□□□□ 0.81
BRCA1P38398 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC20.12■□□□□ 0.81
BRCA1P38398 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRCA1P38398 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC20.12■□□□□ 0.81
BRCA1P38398 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRCA1P38398 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC20.12■□□□□ 0.81
BRCA1P38398 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
BRCA1P38398 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRCA1P38398 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRCA1P38398 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRCA1P38398 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRCA1P38398 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
BRCA1P38398 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRCA1P38398 IGHJ2P-201ENST00000454480 60 ntBASIC20.11■□□□□ 0.81
BRCA1P38398 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC20.11■□□□□ 0.81
BRCA1P38398 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC20.11■□□□□ 0.81
BRCA1P38398 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BRCA1P38398 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.11■□□□□ 0.81
BRCA1P38398 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BRCA1P38398 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BRCA1P38398 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
BRCA1P38398 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
BRCA1P38398 LINC01115-203ENST00000606068 577 ntBASIC20.11■□□□□ 0.81
BRCA1P38398 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
BRCA1P38398 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRCA1P38398 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRCA1P38398 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRCA1P38398 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRCA1P38398 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
BRCA1P38398 TP73-213ENST00000604479 1623 ntTSL 5 BASIC20.11■□□□□ 0.81
BRCA1P38398 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BRCA1P38398 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
BRCA1P38398 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRCA1P38398 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC20.11■□□□□ 0.81
BRCA1P38398 VMO1-203ENST00000416307 712 ntTSL 2 BASIC20.11■□□□□ 0.81
BRCA1P38398 AC068587.3-201ENST00000526613 355 ntBASIC20.11■□□□□ 0.81
BRCA1P38398 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BRCA1P38398 MIR6069-201ENST00000620069 79 ntBASIC20.11■□□□□ 0.81
BRCA1P38398 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRCA1P38398 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
BRCA1P38398 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
BRCA1P38398 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
BRCA1P38398 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
BRCA1P38398 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms