Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RXRBP28702 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
RXRBP28702 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RXRBP28702 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RXRBP28702 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
RXRBP28702 RPS3-201ENST00000278572 907 ntTSL 3 BASIC21.72■■□□□ 1.07
RXRBP28702 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RXRBP28702 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RXRBP28702 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.72■■□□□ 1.07
RXRBP28702 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC21.72■■□□□ 1.07
RXRBP28702 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RXRBP28702 AC026979.3-201ENST00000607315 403 ntBASIC21.72■■□□□ 1.07
RXRBP28702 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RXRBP28702 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
RXRBP28702 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RXRBP28702 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
RXRBP28702 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.72■■□□□ 1.07
RXRBP28702 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RXRBP28702 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
RXRBP28702 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RXRBP28702 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RXRBP28702 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RXRBP28702 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RXRBP28702 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
RXRBP28702 AC073592.3-201ENST00000625118 1834 ntBASIC21.71■■□□□ 1.07
RXRBP28702 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC21.71■■□□□ 1.07
RXRBP28702 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RXRBP28702 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RXRBP28702 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC21.71■■□□□ 1.07
RXRBP28702 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RXRBP28702 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC21.71■■□□□ 1.07
RXRBP28702 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC21.71■■□□□ 1.07
RXRBP28702 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC21.71■■□□□ 1.07
RXRBP28702 AC091804.1-201ENST00000486888 567 ntBASIC21.71■■□□□ 1.07
RXRBP28702 HIST2H2BC-201ENST00000498492 580 ntBASIC21.71■■□□□ 1.07
RXRBP28702 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RXRBP28702 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC21.71■■□□□ 1.07
RXRBP28702 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC21.71■■□□□ 1.07
RXRBP28702 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
RXRBP28702 AC020914.3-201ENST00000594712 304 ntBASIC21.71■■□□□ 1.07
RXRBP28702 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RXRBP28702 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
RXRBP28702 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RXRBP28702 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
RXRBP28702 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
RXRBP28702 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
RXRBP28702 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RXRBP28702 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
RXRBP28702 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
RXRBP28702 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC21.71■■□□□ 1.07
RXRBP28702 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
RXRBP28702 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.07
RXRBP28702 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC21.7■■□□□ 1.07
RXRBP28702 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
RXRBP28702 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RXRBP28702 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RXRBP28702 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RXRBP28702 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC21.7■■□□□ 1.06
RXRBP28702 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RXRBP28702 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC21.7■■□□□ 1.06
RXRBP28702 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC21.7■■□□□ 1.06
RXRBP28702 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC21.7■■□□□ 1.06
RXRBP28702 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC21.7■■□□□ 1.06
RXRBP28702 FHL2-212ENST00000607522 759 ntTSL 2 BASIC21.7■■□□□ 1.06
RXRBP28702 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC21.7■■□□□ 1.06
RXRBP28702 AC138627.1-207ENST00000641560 1006 ntBASIC21.7■■□□□ 1.06
RXRBP28702 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RXRBP28702 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RXRBP28702 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
RXRBP28702 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.7■■□□□ 1.06
RXRBP28702 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
RXRBP28702 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
RXRBP28702 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RXRBP28702 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
RXRBP28702 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
RXRBP28702 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
RXRBP28702 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RXRBP28702 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
RXRBP28702 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RXRBP28702 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
RXRBP28702 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC21.69■■□□□ 1.06
RXRBP28702 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC21.69■■□□□ 1.06
RXRBP28702 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RXRBP28702 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
RXRBP28702 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
RXRBP28702 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RXRBP28702 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
RXRBP28702 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RXRBP28702 PTPA-217ENST00000434095 870 ntTSL 2 BASIC21.69■■□□□ 1.06
RXRBP28702 AC004898.1-201ENST00000451057 766 ntBASIC21.69■■□□□ 1.06
RXRBP28702 MIR4750-201ENST00000584564 56 ntBASIC21.69■■□□□ 1.06
RXRBP28702 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC21.69■■□□□ 1.06
RXRBP28702 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC21.69■■□□□ 1.06
RXRBP28702 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC21.69■■□□□ 1.06
RXRBP28702 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC21.69■■□□□ 1.06
RXRBP28702 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
RXRBP28702 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
RXRBP28702 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RXRBP28702 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC21.69■■□□□ 1.06
RXRBP28702 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms