Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP1O15259 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP1O15259 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
NPHP1O15259 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.21■□□□□ 0.99
NPHP1O15259 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP1O15259 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP1O15259 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
NPHP1O15259 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
NPHP1O15259 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP1O15259 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
NPHP1O15259 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP1O15259 GK-202ENST00000378941 458 ntTSL 3 BASIC21.21■□□□□ 0.99
NPHP1O15259 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.21■□□□□ 0.99
NPHP1O15259 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC21.21■□□□□ 0.99
NPHP1O15259 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC21.21■□□□□ 0.99
NPHP1O15259 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC21.21■□□□□ 0.99
NPHP1O15259 AC109635.5-201ENST00000533593 962 ntBASIC21.21■□□□□ 0.99
NPHP1O15259 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC21.21■□□□□ 0.99
NPHP1O15259 LINC01225-203ENST00000563550 1244 ntBASIC21.21■□□□□ 0.99
NPHP1O15259 COX11-202ENST00000571584 1108 ntTSL 2 BASIC21.21■□□□□ 0.99
NPHP1O15259 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC21.21■□□□□ 0.99
NPHP1O15259 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC21.21■□□□□ 0.99
NPHP1O15259 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
NPHP1O15259 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC21.21■□□□□ 0.99
NPHP1O15259 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC21.21■□□□□ 0.99
NPHP1O15259 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC21.2■□□□□ 0.98
NPHP1O15259 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
NPHP1O15259 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
NPHP1O15259 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.2■□□□□ 0.98
NPHP1O15259 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP1O15259 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC21.2■□□□□ 0.98
NPHP1O15259 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP1O15259 GNAS-203ENST00000306120 1878 ntBASIC21.2■□□□□ 0.98
NPHP1O15259 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP1O15259 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.2■□□□□ 0.98
NPHP1O15259 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP1O15259 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP1O15259 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
NPHP1O15259 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP1O15259 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
NPHP1O15259 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC21.2■□□□□ 0.98
NPHP1O15259 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP1O15259 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
NPHP1O15259 MIR661-201ENST00000384842 89 ntBASIC21.2■□□□□ 0.98
NPHP1O15259 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC21.2■□□□□ 0.98
NPHP1O15259 HCG4-201ENST00000418983 998 ntBASIC21.2■□□□□ 0.98
NPHP1O15259 PPP6R2P1-201ENST00000450880 1275 ntBASIC21.2■□□□□ 0.98
NPHP1O15259 ALG1L8P-201ENST00000533887 760 ntBASIC21.2■□□□□ 0.98
NPHP1O15259 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP1O15259 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC21.2■□□□□ 0.98
NPHP1O15259 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC21.2■□□□□ 0.98
NPHP1O15259 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP1O15259 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP1O15259 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
NPHP1O15259 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.2■□□□□ 0.98
NPHP1O15259 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
NPHP1O15259 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 AC009113.1-201ENST00000570267 2443 ntBASIC21.19■□□□□ 0.98
NPHP1O15259 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC21.19■□□□□ 0.98
NPHP1O15259 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
NPHP1O15259 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC21.19■□□□□ 0.98
NPHP1O15259 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC21.19■□□□□ 0.98
NPHP1O15259 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC21.19■□□□□ 0.98
NPHP1O15259 AC027307.2-201ENST00000591252 911 ntBASIC21.19■□□□□ 0.98
NPHP1O15259 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.19■□□□□ 0.98
NPHP1O15259 AL031055.1-201ENST00000606362 631 ntBASIC21.19■□□□□ 0.98
NPHP1O15259 CECR7-204ENST00000609932 568 ntTSL 2 BASIC21.19■□□□□ 0.98
NPHP1O15259 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
NPHP1O15259 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
NPHP1O15259 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
NPHP1O15259 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
NPHP1O15259 LINC00304-203ENST00000565008 1864 ntBASIC21.19■□□□□ 0.98
NPHP1O15259 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 AC012313.1-201ENST00000593393 3059 ntBASIC21.19■□□□□ 0.98
NPHP1O15259 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC21.19■□□□□ 0.98
NPHP1O15259 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
NPHP1O15259 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP1O15259 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP1O15259 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP1O15259 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.18■□□□□ 0.98
NPHP1O15259 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP1O15259 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP1O15259 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms