Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 FAM58CP-201ENST00000435741 640 ntBASIC16.95■□□□□ 0.3
DKK3Q9UBP4 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 AC087641.1-201ENST00000557561 1021 ntBASIC16.95■□□□□ 0.3
DKK3Q9UBP4 MIR4492-201ENST00000581627 80 ntBASIC16.95■□□□□ 0.3
DKK3Q9UBP4 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 AC091812.2-201ENST00000619081 385 ntBASIC16.95■□□□□ 0.3
DKK3Q9UBP4 AP001350.2-201ENST00000625104 1094 ntBASIC16.95■□□□□ 0.3
DKK3Q9UBP4 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 AC131009.4-201ENST00000624048 1740 ntBASIC16.95■□□□□ 0.3
DKK3Q9UBP4 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 AC108860.2-201ENST00000562760 2183 ntBASIC16.95■□□□□ 0.3
DKK3Q9UBP4 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.95■□□□□ 0.3
DKK3Q9UBP4 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 ELL2P1-201ENST00000413990 1906 ntBASIC16.94■□□□□ 0.3
DKK3Q9UBP4 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 AL645608.8-201ENST00000606034 2086 ntBASIC16.94■□□□□ 0.3
DKK3Q9UBP4 AC002056.1-201ENST00000395613 760 ntBASIC16.94■□□□□ 0.3
DKK3Q9UBP4 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 AC112191.1-201ENST00000523689 701 ntBASIC16.94■□□□□ 0.3
DKK3Q9UBP4 AL078644.1-201ENST00000609881 752 ntBASIC16.94■□□□□ 0.3
DKK3Q9UBP4 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
DKK3Q9UBP4 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 AL121761.2-201ENST00000598007 1648 ntBASIC16.93■□□□□ 0.3
DKK3Q9UBP4 AC092919.2-201ENST00000623631 1645 ntBASIC16.93■□□□□ 0.3
DKK3Q9UBP4 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 AC004967.1-201ENST00000453589 447 ntBASIC16.93■□□□□ 0.3
DKK3Q9UBP4 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.93■□□□□ 0.3
DKK3Q9UBP4 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.93■□□□□ 0.3
DKK3Q9UBP4 AC092902.6-201ENST00000641783 218 ntBASIC16.93■□□□□ 0.3
DKK3Q9UBP4 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.93■□□□□ 0.3
DKK3Q9UBP4 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
DKK3Q9UBP4 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms