Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 MIR1233-2-201ENST00000408138 82 ntBASIC17.4■□□□□ 0.38
USP29Q9HBJ7 MIR1233-1-201ENST00000408722 82 ntBASIC17.4■□□□□ 0.38
USP29Q9HBJ7 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 BX842568.4-201ENST00000421222 227 ntBASIC17.4■□□□□ 0.38
USP29Q9HBJ7 AL591424.1-201ENST00000442569 1213 ntBASIC17.4■□□□□ 0.38
USP29Q9HBJ7 PAWRP1-201ENST00000451083 565 ntBASIC17.4■□□□□ 0.38
USP29Q9HBJ7 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 POLD2P1-201ENST00000511220 997 ntBASIC17.4■□□□□ 0.38
USP29Q9HBJ7 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 OR7E14P-202ENST00000530490 1290 ntBASIC17.4■□□□□ 0.38
USP29Q9HBJ7 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 AC092865.5-201ENST00000545435 363 ntBASIC17.4■□□□□ 0.38
USP29Q9HBJ7 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 MTDHP4-201ENST00000600287 670 ntBASIC17.4■□□□□ 0.38
USP29Q9HBJ7 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.4■□□□□ 0.38
USP29Q9HBJ7 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
USP29Q9HBJ7 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
USP29Q9HBJ7 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
USP29Q9HBJ7 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
USP29Q9HBJ7 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 IGHV3-22-201ENST00000520721 359 ntBASIC17.39■□□□□ 0.37
USP29Q9HBJ7 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 AC027601.4-201ENST00000611259 610 ntBASIC17.39■□□□□ 0.37
USP29Q9HBJ7 AC004706.3-202ENST00000621574 984 ntBASIC17.39■□□□□ 0.37
USP29Q9HBJ7 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.39■□□□□ 0.37
USP29Q9HBJ7 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP29Q9HBJ7 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP29Q9HBJ7 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP29Q9HBJ7 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
USP29Q9HBJ7 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP29Q9HBJ7 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.38■□□□□ 0.37
USP29Q9HBJ7 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP29Q9HBJ7 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.38■□□□□ 0.37
USP29Q9HBJ7 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP29Q9HBJ7 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms