Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.74■□□□□ 0.75
NUP88Q99567 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
NUP88Q99567 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.74■□□□□ 0.75
NUP88Q99567 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.74■□□□□ 0.75
NUP88Q99567 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.74■□□□□ 0.75
NUP88Q99567 AC099522.2-201ENST00000607001 744 ntBASIC19.74■□□□□ 0.75
NUP88Q99567 BANP-227ENST00000626016 2144 ntTSL 2 BASIC19.74■□□□□ 0.75
NUP88Q99567 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
NUP88Q99567 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.74■□□□□ 0.75
NUP88Q99567 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.74■□□□□ 0.75
NUP88Q99567 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.74■□□□□ 0.75
NUP88Q99567 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 CROCCP2-202ENST00000412962 2773 ntBASIC19.74■□□□□ 0.75
NUP88Q99567 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NUP88Q99567 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.73■□□□□ 0.75
NUP88Q99567 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.73■□□□□ 0.75
NUP88Q99567 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.73■□□□□ 0.75
NUP88Q99567 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.73■□□□□ 0.75
NUP88Q99567 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 AC116353.5-201ENST00000638148 1699 ntBASIC19.73■□□□□ 0.75
NUP88Q99567 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
NUP88Q99567 AL139400.1-201ENST00000366220 510 ntBASIC19.73■□□□□ 0.75
NUP88Q99567 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 HMGA1P7-201ENST00000406908 502 ntBASIC19.73■□□□□ 0.75
NUP88Q99567 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC19.73■□□□□ 0.75
NUP88Q99567 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.73■□□□□ 0.75
NUP88Q99567 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.73■□□□□ 0.75
NUP88Q99567 AC112191.1-201ENST00000523689 701 ntBASIC19.73■□□□□ 0.75
NUP88Q99567 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.73■□□□□ 0.75
NUP88Q99567 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.73■□□□□ 0.75
NUP88Q99567 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
NUP88Q99567 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.73■□□□□ 0.75
NUP88Q99567 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.73■□□□□ 0.75
NUP88Q99567 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.73■□□□□ 0.75
NUP88Q99567 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.73■□□□□ 0.75
NUP88Q99567 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
NUP88Q99567 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.73■□□□□ 0.75
NUP88Q99567 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP88Q99567 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
NUP88Q99567 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
NUP88Q99567 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NUP88Q99567 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19.72■□□□□ 0.75
NUP88Q99567 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
NUP88Q99567 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NUP88Q99567 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NUP88Q99567 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
NUP88Q99567 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NUP88Q99567 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NUP88Q99567 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NUP88Q99567 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
NUP88Q99567 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19.72■□□□□ 0.75
NUP88Q99567 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
NUP88Q99567 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.72■□□□□ 0.75
NUP88Q99567 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NUP88Q99567 AC140658.5-201ENST00000438532 169 ntBASIC19.72■□□□□ 0.75
NUP88Q99567 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NUP88Q99567 AP000344.2-201ENST00000512987 629 ntBASIC19.72■□□□□ 0.75
NUP88Q99567 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.72■□□□□ 0.75
NUP88Q99567 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
NUP88Q99567 MIR4515-201ENST00000584082 81 ntBASIC19.72■□□□□ 0.75
NUP88Q99567 AC022145.2-201ENST00000598203 171 ntBASIC19.72■□□□□ 0.75
NUP88Q99567 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.72■□□□□ 0.75
NUP88Q99567 AC093028.1-201ENST00000622998 982 ntBASIC19.72■□□□□ 0.75
NUP88Q99567 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.72■□□□□ 0.75
NUP88Q99567 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NUP88Q99567 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
NUP88Q99567 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.72■□□□□ 0.75
NUP88Q99567 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
NUP88Q99567 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NUP88Q99567 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
NUP88Q99567 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP88Q99567 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP88Q99567 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP88Q99567 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms