Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
USP39Q53GS9 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
USP39Q53GS9 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 AL135999.2-201ENST00000622438 1686 ntBASIC17.17■□□□□ 0.34
USP39Q53GS9 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.17■□□□□ 0.34
USP39Q53GS9 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.17■□□□□ 0.34
USP39Q53GS9 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
USP39Q53GS9 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.17■□□□□ 0.34
USP39Q53GS9 AL592309.1-201ENST00000443127 649 ntBASIC17.17■□□□□ 0.34
USP39Q53GS9 RN7SL589P-201ENST00000481268 310 ntBASIC17.17■□□□□ 0.34
USP39Q53GS9 INGX-202ENST00000489074 768 ntBASIC17.17■□□□□ 0.34
USP39Q53GS9 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.17■□□□□ 0.34
USP39Q53GS9 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.17■□□□□ 0.34
USP39Q53GS9 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.17■□□□□ 0.34
USP39Q53GS9 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.17■□□□□ 0.34
USP39Q53GS9 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.17■□□□□ 0.34
USP39Q53GS9 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
USP39Q53GS9 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.17■□□□□ 0.34
USP39Q53GS9 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
USP39Q53GS9 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.17■□□□□ 0.34
USP39Q53GS9 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
USP39Q53GS9 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
USP39Q53GS9 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
USP39Q53GS9 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
USP39Q53GS9 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
USP39Q53GS9 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP39Q53GS9 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
USP39Q53GS9 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
USP39Q53GS9 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
USP39Q53GS9 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.16■□□□□ 0.34
USP39Q53GS9 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.16■□□□□ 0.34
USP39Q53GS9 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
USP39Q53GS9 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.16■□□□□ 0.34
USP39Q53GS9 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP39Q53GS9 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
USP39Q53GS9 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP39Q53GS9 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP39Q53GS9 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.16■□□□□ 0.34
USP39Q53GS9 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.16■□□□□ 0.34
USP39Q53GS9 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.16■□□□□ 0.34
USP39Q53GS9 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.16■□□□□ 0.34
USP39Q53GS9 AC140658.5-201ENST00000438532 169 ntBASIC17.16■□□□□ 0.34
USP39Q53GS9 AC087163.2-201ENST00000457299 853 ntBASIC17.16■□□□□ 0.34
USP39Q53GS9 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.16■□□□□ 0.34
USP39Q53GS9 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
USP39Q53GS9 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.16■□□□□ 0.34
USP39Q53GS9 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.16■□□□□ 0.34
USP39Q53GS9 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.16■□□□□ 0.34
USP39Q53GS9 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.16■□□□□ 0.34
USP39Q53GS9 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP39Q53GS9 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USP39Q53GS9 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.16■□□□□ 0.34
USP39Q53GS9 AC133963.1-201ENST00000504166 1679 ntBASIC17.16■□□□□ 0.34
USP39Q53GS9 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.16■□□□□ 0.34
USP39Q53GS9 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
USP39Q53GS9 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
USP39Q53GS9 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
USP39Q53GS9 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.15■□□□□ 0.34
USP39Q53GS9 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.15■□□□□ 0.34
USP39Q53GS9 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.15■□□□□ 0.34
USP39Q53GS9 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
USP39Q53GS9 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
USP39Q53GS9 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.15■□□□□ 0.34
USP39Q53GS9 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
USP39Q53GS9 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 BASP1P1-201ENST00000430708 665 ntBASIC17.15■□□□□ 0.34
USP39Q53GS9 SLC25A6P2-201ENST00000497974 877 ntBASIC17.15■□□□□ 0.34
USP39Q53GS9 KRT8P48-201ENST00000515599 1220 ntBASIC17.15■□□□□ 0.34
USP39Q53GS9 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.15■□□□□ 0.34
USP39Q53GS9 DUX4L27-201ENST00000554796 1261 ntBASIC17.15■□□□□ 0.34
USP39Q53GS9 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.15■□□□□ 0.34
USP39Q53GS9 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.15■□□□□ 0.34
USP39Q53GS9 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP39Q53GS9 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
USP39Q53GS9 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms