Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 AC010460.3-201ENST00000511359 1579 ntBASIC16.26■□□□□ 0.19
COL28A1Q2UY09 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 PTCHD3P3-201ENST00000403073 906 ntBASIC16.26■□□□□ 0.19
COL28A1Q2UY09 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 KRT18P32-201ENST00000424695 1287 ntBASIC16.26■□□□□ 0.19
COL28A1Q2UY09 GPR53P-205ENST00000457298 1084 ntBASIC16.26■□□□□ 0.19
COL28A1Q2UY09 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 AL512356.2-201ENST00000546955 174 ntBASIC16.26■□□□□ 0.19
COL28A1Q2UY09 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 AC012317.2-201ENST00000623305 2251 ntBASIC16.26■□□□□ 0.19
COL28A1Q2UY09 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL28A1Q2UY09 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 AC103564.2-201ENST00000432853 1299 ntBASIC16.25■□□□□ 0.19
COL28A1Q2UY09 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 CXCL1P1-201ENST00000502804 216 ntBASIC16.25■□□□□ 0.19
COL28A1Q2UY09 KRT8P48-201ENST00000515599 1220 ntBASIC16.25■□□□□ 0.19
COL28A1Q2UY09 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 AC140878.1-201ENST00000565277 250 ntBASIC16.25■□□□□ 0.19
COL28A1Q2UY09 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL28A1Q2UY09 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 PIN1P1-201ENST00000412108 996 ntBASIC16.24■□□□□ 0.19
COL28A1Q2UY09 AL592309.1-201ENST00000443127 649 ntBASIC16.24■□□□□ 0.19
COL28A1Q2UY09 SPDYE11-202ENST00000450699 704 ntBASIC16.24■□□□□ 0.19
COL28A1Q2UY09 SERBP1P5-201ENST00000510079 1181 ntBASIC16.24■□□□□ 0.19
COL28A1Q2UY09 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms