Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
MSH6P52701 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC23.1■■□□□ 1.29
MSH6P52701 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC23.1■■□□□ 1.29
MSH6P52701 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC23.1■■□□□ 1.29
MSH6P52701 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
MSH6P52701 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC23.1■■□□□ 1.29
MSH6P52701 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
MSH6P52701 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC23.1■■□□□ 1.29
MSH6P52701 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC23.09■■□□□ 1.29
MSH6P52701 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
MSH6P52701 PODN-203ENST00000395871 2744 ntTSL 5 BASIC23.09■■□□□ 1.29
MSH6P52701 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH6P52701 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
MSH6P52701 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
MSH6P52701 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH6P52701 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
MSH6P52701 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
MSH6P52701 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC23.09■■□□□ 1.29
MSH6P52701 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
MSH6P52701 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC23.09■■□□□ 1.29
MSH6P52701 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC23.09■■□□□ 1.29
MSH6P52701 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC23.09■■□□□ 1.29
MSH6P52701 IGHV3OR16-16-201ENST00000563644 343 ntBASIC23.09■■□□□ 1.29
MSH6P52701 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC23.09■■□□□ 1.29
MSH6P52701 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC23.09■■□□□ 1.29
MSH6P52701 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
MSH6P52701 TECR-220ENST00000600083 1204 ntTSL 2 BASIC23.09■■□□□ 1.29
MSH6P52701 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
MSH6P52701 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH6P52701 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
MSH6P52701 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH6P52701 FOS-208ENST00000555686 1496 ntTSL 2 BASIC23.08■■□□□ 1.29
MSH6P52701 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH6P52701 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC23.08■■□□□ 1.29
MSH6P52701 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH6P52701 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
MSH6P52701 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH6P52701 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
MSH6P52701 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
MSH6P52701 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH6P52701 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH6P52701 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH6P52701 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
MSH6P52701 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC23.08■■□□□ 1.29
MSH6P52701 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC23.08■■□□□ 1.29
MSH6P52701 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC23.08■■□□□ 1.29
MSH6P52701 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC23.08■■□□□ 1.29
MSH6P52701 AC098859.1-201ENST00000502915 1238 ntBASIC23.08■■□□□ 1.29
MSH6P52701 FTH1-202ENST00000526640 786 ntTSL 2 BASIC23.08■■□□□ 1.29
MSH6P52701 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC23.08■■□□□ 1.29
MSH6P52701 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
MSH6P52701 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
MSH6P52701 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
MSH6P52701 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC23.08■■□□□ 1.28
MSH6P52701 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC23.08■■□□□ 1.28
MSH6P52701 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC23.08■■□□□ 1.28
MSH6P52701 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH6P52701 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
MSH6P52701 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
MSH6P52701 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
MSH6P52701 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH6P52701 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC23.07■■□□□ 1.28
MSH6P52701 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH6P52701 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
MSH6P52701 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC23.07■■□□□ 1.28
MSH6P52701 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH6P52701 AL583810.1-201ENST00000553344 1045 ntBASIC23.07■■□□□ 1.28
MSH6P52701 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC23.07■■□□□ 1.28
MSH6P52701 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC23.07■■□□□ 1.28
MSH6P52701 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC23.07■■□□□ 1.28
MSH6P52701 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC23.07■■□□□ 1.28
MSH6P52701 WNT11-204ENST00000621122 789 ntTSL 5 BASIC23.07■■□□□ 1.28
MSH6P52701 AC004461.2-201ENST00000629517 803 ntBASIC23.07■■□□□ 1.28
MSH6P52701 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH6P52701 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH6P52701 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC23.07■■□□□ 1.28
MSH6P52701 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC23.07■■□□□ 1.28
MSH6P52701 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
MSH6P52701 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC23.07■■□□□ 1.28
MSH6P52701 GOLGA2P9-201ENST00000596977 1937 ntBASIC23.07■■□□□ 1.28
MSH6P52701 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC23.07■■□□□ 1.28
MSH6P52701 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
MSH6P52701 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
MSH6P52701 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH6P52701 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC23.07■■□□□ 1.28
MSH6P52701 LINC00304-203ENST00000565008 1864 ntBASIC23.07■■□□□ 1.28
MSH6P52701 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH6P52701 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC23.06■■□□□ 1.28
MSH6P52701 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH6P52701 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
MSH6P52701 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH6P52701 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH6P52701 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH6P52701 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH6P52701 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC23.06■■□□□ 1.28
MSH6P52701 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC23.06■■□□□ 1.28
MSH6P52701 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC23.06■■□□□ 1.28
MSH6P52701 KRT43P-201ENST00000434019 910 ntBASIC23.06■■□□□ 1.28
MSH6P52701 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC23.06■■□□□ 1.28
MSH6P52701 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC23.06■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms