Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.29■□□□□ 0.68
SMARCA1P28370 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
SMARCA1P28370 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.29■□□□□ 0.68
SMARCA1P28370 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SMARCA1P28370 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.29■□□□□ 0.68
SMARCA1P28370 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC19.29■□□□□ 0.68
SMARCA1P28370 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
SMARCA1P28370 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.29■□□□□ 0.68
SMARCA1P28370 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC19.29■□□□□ 0.68
SMARCA1P28370 MIR4469-201ENST00000583919 79 ntBASIC19.29■□□□□ 0.68
SMARCA1P28370 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SMARCA1P28370 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC19.29■□□□□ 0.68
SMARCA1P28370 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
SMARCA1P28370 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SMARCA1P28370 AC055717.3-201ENST00000622967 595 ntBASIC19.29■□□□□ 0.68
SMARCA1P28370 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.29■□□□□ 0.68
SMARCA1P28370 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.29■□□□□ 0.68
SMARCA1P28370 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.29■□□□□ 0.68
SMARCA1P28370 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SMARCA1P28370 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.28■□□□□ 0.68
SMARCA1P28370 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCA1P28370 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCA1P28370 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCA1P28370 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.28■□□□□ 0.68
SMARCA1P28370 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCA1P28370 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SMARCA1P28370 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCA1P28370 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCA1P28370 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.28■□□□□ 0.68
SMARCA1P28370 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.28■□□□□ 0.68
SMARCA1P28370 AP006288.1-201ENST00000446065 395 ntBASIC19.28■□□□□ 0.68
SMARCA1P28370 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCA1P28370 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCA1P28370 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC19.28■□□□□ 0.68
SMARCA1P28370 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19.28■□□□□ 0.68
SMARCA1P28370 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.28■□□□□ 0.68
SMARCA1P28370 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCA1P28370 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.28■□□□□ 0.68
SMARCA1P28370 AC006538.3-201ENST00000612495 578 ntBASIC19.28■□□□□ 0.68
SMARCA1P28370 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SMARCA1P28370 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SMARCA1P28370 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCA1P28370 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCA1P28370 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCA1P28370 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
SMARCA1P28370 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCA1P28370 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.28■□□□□ 0.68
SMARCA1P28370 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCA1P28370 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCA1P28370 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCA1P28370 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC19.27■□□□□ 0.68
SMARCA1P28370 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCA1P28370 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCA1P28370 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCA1P28370 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCA1P28370 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCA1P28370 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCA1P28370 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCA1P28370 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SMARCA1P28370 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.27■□□□□ 0.68
SMARCA1P28370 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.27■□□□□ 0.68
SMARCA1P28370 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCA1P28370 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.27■□□□□ 0.68
SMARCA1P28370 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
SMARCA1P28370 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCA1P28370 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC19.27■□□□□ 0.68
SMARCA1P28370 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.27■□□□□ 0.68
SMARCA1P28370 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SMARCA1P28370 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC19.27■□□□□ 0.68
SMARCA1P28370 MIR1233-2-201ENST00000408138 82 ntBASIC19.27■□□□□ 0.68
SMARCA1P28370 MIR1233-1-201ENST00000408722 82 ntBASIC19.27■□□□□ 0.68
SMARCA1P28370 AC211486.1-202ENST00000416371 468 ntBASIC19.27■□□□□ 0.68
SMARCA1P28370 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.27■□□□□ 0.68
SMARCA1P28370 CEND1P1-201ENST00000451006 455 ntBASIC19.27■□□□□ 0.68
SMARCA1P28370 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.27■□□□□ 0.68
SMARCA1P28370 AC211476.1-201ENST00000503899 468 ntBASIC19.27■□□□□ 0.68
SMARCA1P28370 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.27■□□□□ 0.68
SMARCA1P28370 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.27■□□□□ 0.68
SMARCA1P28370 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC19.27■□□□□ 0.68
SMARCA1P28370 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCA1P28370 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
SMARCA1P28370 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCA1P28370 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.27■□□□□ 0.68
SMARCA1P28370 AC026120.1-201ENST00000611536 926 ntBASIC19.27■□□□□ 0.68
SMARCA1P28370 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms