Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
NPHP4O75161 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC23.36■■□□□ 1.33
NPHP4O75161 GPAA1P2-201ENST00000417923 928 ntBASIC23.36■■□□□ 1.33
NPHP4O75161 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC23.36■■□□□ 1.33
NPHP4O75161 SLC25A47P1-201ENST00000531577 414 ntBASIC23.36■■□□□ 1.33
NPHP4O75161 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC23.36■■□□□ 1.33
NPHP4O75161 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC23.36■■□□□ 1.33
NPHP4O75161 DERL2-202ENST00000570848 657 ntTSL 5 BASIC23.36■■□□□ 1.33
NPHP4O75161 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC23.36■■□□□ 1.33
NPHP4O75161 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC23.36■■□□□ 1.33
NPHP4O75161 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
NPHP4O75161 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
NPHP4O75161 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP4O75161 FRMD8P1-201ENST00000440433 1524 ntBASIC23.35■■□□□ 1.33
NPHP4O75161 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP4O75161 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP4O75161 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP4O75161 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
NPHP4O75161 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC23.35■■□□□ 1.33
NPHP4O75161 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP4O75161 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP4O75161 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP4O75161 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC23.35■■□□□ 1.33
NPHP4O75161 RARRES2P5-201ENST00000564013 466 ntBASIC23.35■■□□□ 1.33
NPHP4O75161 AC061975.2-201ENST00000581722 295 ntBASIC23.35■■□□□ 1.33
NPHP4O75161 RN7SL190P-201ENST00000582519 257 ntBASIC23.35■■□□□ 1.33
NPHP4O75161 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC23.35■■□□□ 1.33
NPHP4O75161 AC074044.1-201ENST00000609673 707 ntBASIC23.35■■□□□ 1.33
NPHP4O75161 MIR6069-201ENST00000620069 79 ntBASIC23.35■■□□□ 1.33
NPHP4O75161 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC23.35■■□□□ 1.33
NPHP4O75161 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP4O75161 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC23.35■■□□□ 1.33
NPHP4O75161 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC23.35■■□□□ 1.33
NPHP4O75161 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
NPHP4O75161 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
NPHP4O75161 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
NPHP4O75161 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC23.35■■□□□ 1.33
NPHP4O75161 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
NPHP4O75161 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
NPHP4O75161 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC23.35■■□□□ 1.33
NPHP4O75161 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP4O75161 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
NPHP4O75161 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP4O75161 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP4O75161 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC23.34■■□□□ 1.33
NPHP4O75161 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC23.34■■□□□ 1.33
NPHP4O75161 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC23.34■■□□□ 1.33
NPHP4O75161 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC23.34■■□□□ 1.33
NPHP4O75161 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC23.34■■□□□ 1.33
NPHP4O75161 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC23.34■■□□□ 1.33
NPHP4O75161 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP4O75161 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC23.34■■□□□ 1.33
NPHP4O75161 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC23.34■■□□□ 1.33
NPHP4O75161 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC23.34■■□□□ 1.33
NPHP4O75161 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP4O75161 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP4O75161 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP4O75161 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP4O75161 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC23.34■■□□□ 1.33
NPHP4O75161 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC23.34■■□□□ 1.33
NPHP4O75161 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC23.34■■□□□ 1.33
NPHP4O75161 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP4O75161 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP4O75161 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
NPHP4O75161 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP4O75161 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP4O75161 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
NPHP4O75161 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP4O75161 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP4O75161 AC007551.1-201ENST00000457394 519 ntBASIC23.33■■□□□ 1.33
NPHP4O75161 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC23.33■■□□□ 1.33
NPHP4O75161 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP4O75161 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC23.33■■□□□ 1.33
NPHP4O75161 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC23.33■■□□□ 1.33
NPHP4O75161 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC23.33■■□□□ 1.33
NPHP4O75161 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC23.33■■□□□ 1.33
NPHP4O75161 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP4O75161 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP4O75161 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP4O75161 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP4O75161 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
NPHP4O75161 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC23.33■■□□□ 1.33
NPHP4O75161 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP4O75161 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
NPHP4O75161 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
NPHP4O75161 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC23.33■■□□□ 1.32
NPHP4O75161 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
NPHP4O75161 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
NPHP4O75161 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
NPHP4O75161 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC23.33■■□□□ 1.32
NPHP4O75161 AC026979.3-201ENST00000607315 403 ntBASIC23.33■■□□□ 1.32
NPHP4O75161 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
NPHP4O75161 ABBA01031660.1-201ENST00000635219 756 ntBASIC23.33■■□□□ 1.32
NPHP4O75161 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
NPHP4O75161 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC23.32■■□□□ 1.32
NPHP4O75161 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC23.32■■□□□ 1.32
NPHP4O75161 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC23.32■■□□□ 1.32
NPHP4O75161 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP4O75161 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC23.32■■□□□ 1.32
NPHP4O75161 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms