Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1BO60663 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.89□□□□□ -0.03
LMX1BO60663 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1BO60663 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1BO60663 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.89□□□□□ -0.03
LMX1BO60663 AC148477.5-201ENST00000625164 1645 ntBASIC14.89□□□□□ -0.03
LMX1BO60663 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
LMX1BO60663 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1BO60663 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC14.89□□□□□ -0.03
LMX1BO60663 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC14.89□□□□□ -0.03
LMX1BO60663 DANCR-204ENST00000444958 709 ntTSL 3 BASIC14.89□□□□□ -0.03
LMX1BO60663 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC14.89□□□□□ -0.03
LMX1BO60663 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC14.89□□□□□ -0.03
LMX1BO60663 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC14.89□□□□□ -0.03
LMX1BO60663 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC14.89□□□□□ -0.03
LMX1BO60663 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1BO60663 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 GZMM-202ENST00000592501 941 ntTSL 3 BASIC14.89□□□□□ -0.03
LMX1BO60663 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1BO60663 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1BO60663 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 CICP6-201ENST00000457191 2729 ntBASIC14.89□□□□□ -0.03
LMX1BO60663 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LMX1BO60663 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1BO60663 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC14.89□□□□□ -0.03
LMX1BO60663 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC14.89□□□□□ -0.03
LMX1BO60663 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
LMX1BO60663 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1BO60663 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1BO60663 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1BO60663 GPR89P-201ENST00000407924 1495 ntBASIC14.89□□□□□ -0.03
LMX1BO60663 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LMX1BO60663 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
LMX1BO60663 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC14.88□□□□□ -0.03
LMX1BO60663 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
LMX1BO60663 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.88□□□□□ -0.03
LMX1BO60663 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1BO60663 AC092364.2-201ENST00000596710 2692 ntBASIC14.88□□□□□ -0.03
LMX1BO60663 MED16-201ENST00000269814 1199 ntTSL 5 BASIC14.88□□□□□ -0.03
LMX1BO60663 AC003669.1-201ENST00000334569 611 ntBASIC14.88□□□□□ -0.03
LMX1BO60663 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1BO60663 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC14.88□□□□□ -0.03
LMX1BO60663 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1BO60663 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC14.88□□□□□ -0.03
LMX1BO60663 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC14.88□□□□□ -0.03
LMX1BO60663 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC14.88□□□□□ -0.03
LMX1BO60663 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC14.88□□□□□ -0.03
LMX1BO60663 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1BO60663 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1BO60663 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1BO60663 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.88□□□□□ -0.03
LMX1BO60663 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
LMX1BO60663 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1BO60663 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.88□□□□□ -0.03
LMX1BO60663 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1BO60663 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
LMX1BO60663 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
LMX1BO60663 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1BO60663 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC14.88□□□□□ -0.03
LMX1BO60663 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1BO60663 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC14.88□□□□□ -0.03
LMX1BO60663 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LMX1BO60663 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
LMX1BO60663 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
LMX1BO60663 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms