Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 AC018712.1-201ENST00000455767 687 ntBASIC16.28■□□□□ 0.2
VMP1Q96GC9 STK19B-204ENST00000512515 211 ntBASIC16.28■□□□□ 0.2
VMP1Q96GC9 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VMP1Q96GC9 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VMP1Q96GC9 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VMP1Q96GC9 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VMP1Q96GC9 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.2
VMP1Q96GC9 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VMP1Q96GC9 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
VMP1Q96GC9 REXO1L11P-201ENST00000620964 1927 ntBASIC16.27■□□□□ 0.2
VMP1Q96GC9 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
VMP1Q96GC9 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
VMP1Q96GC9 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
VMP1Q96GC9 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VMP1Q96GC9 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VMP1Q96GC9 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VMP1Q96GC9 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VMP1Q96GC9 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VMP1Q96GC9 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VMP1Q96GC9 RPS2P28-201ENST00000314255 741 ntBASIC16.27■□□□□ 0.2
VMP1Q96GC9 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VMP1Q96GC9 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.27■□□□□ 0.2
VMP1Q96GC9 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
VMP1Q96GC9 BX005266.1-201ENST00000473402 457 ntBASIC16.27■□□□□ 0.2
VMP1Q96GC9 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VMP1Q96GC9 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.27■□□□□ 0.2
VMP1Q96GC9 AP001005.1-201ENST00000571755 1248 ntBASIC16.27■□□□□ 0.2
VMP1Q96GC9 MTDHP4-201ENST00000600287 670 ntBASIC16.27■□□□□ 0.2
VMP1Q96GC9 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VMP1Q96GC9 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
VMP1Q96GC9 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
VMP1Q96GC9 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VMP1Q96GC9 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VMP1Q96GC9 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
VMP1Q96GC9 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VMP1Q96GC9 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VMP1Q96GC9 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VMP1Q96GC9 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.27■□□□□ 0.19
VMP1Q96GC9 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VMP1Q96GC9 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.27■□□□□ 0.19
VMP1Q96GC9 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.27■□□□□ 0.19
VMP1Q96GC9 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
VMP1Q96GC9 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.26■□□□□ 0.19
VMP1Q96GC9 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms