Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SKA3Q8IX90 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.02■□□□□ -0
SKA3Q8IX90 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
SKA3Q8IX90 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SKA3Q8IX90 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.02■□□□□ -0
SKA3Q8IX90 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.02■□□□□ -0
SKA3Q8IX90 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.02■□□□□ -0
SKA3Q8IX90 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.02■□□□□ -0
SKA3Q8IX90 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.02■□□□□ -0
SKA3Q8IX90 AC073621.1-201ENST00000392730 636 ntBASIC15.02■□□□□ -0
SKA3Q8IX90 PTCHD3P3-201ENST00000403073 906 ntBASIC15.02■□□□□ -0
SKA3Q8IX90 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
SKA3Q8IX90 ELK2BP-201ENST00000415014 1224 ntBASIC15.02■□□□□ -0
SKA3Q8IX90 AL031284.1-201ENST00000419297 478 ntBASIC15.02■□□□□ -0
SKA3Q8IX90 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.02■□□□□ -0
SKA3Q8IX90 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.02■□□□□ -0
SKA3Q8IX90 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.02■□□□□ -0
SKA3Q8IX90 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.02■□□□□ -0
SKA3Q8IX90 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.02■□□□□ -0
SKA3Q8IX90 AC105339.3-201ENST00000560043 636 ntBASIC15.02■□□□□ -0
SKA3Q8IX90 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.02■□□□□ -0
SKA3Q8IX90 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.02■□□□□ -0
SKA3Q8IX90 SLC25A6P4-201ENST00000586535 553 ntBASIC15.02■□□□□ -0
SKA3Q8IX90 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.02■□□□□ -0
SKA3Q8IX90 FAM215A-202ENST00000632077 792 ntBASIC15.02■□□□□ -0
SKA3Q8IX90 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
SKA3Q8IX90 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.02□□□□□ -0.01
SKA3Q8IX90 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
SKA3Q8IX90 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.02□□□□□ -0.01
SKA3Q8IX90 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
SKA3Q8IX90 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.02□□□□□ -0.01
SKA3Q8IX90 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 FLJ38576-201ENST00000623820 2459 ntBASIC15.01□□□□□ -0.01
SKA3Q8IX90 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 KRT18P27-201ENST00000427733 1299 ntBASIC15.01□□□□□ -0.01
SKA3Q8IX90 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 AC124947.2-201ENST00000547118 1133 ntBASIC15.01□□□□□ -0.01
SKA3Q8IX90 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 AL049840.3-201ENST00000602669 611 ntBASIC15.01□□□□□ -0.01
SKA3Q8IX90 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 AP002414.3-201ENST00000589352 1468 ntBASIC15.01□□□□□ -0.01
SKA3Q8IX90 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SKA3Q8IX90 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
SKA3Q8IX90 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
SKA3Q8IX90 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 AC092068.3-201ENST00000587894 2016 ntBASIC15□□□□□ -0.01
SKA3Q8IX90 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 AC243591.1-201ENST00000452967 1364 ntBASIC15□□□□□ -0.01
SKA3Q8IX90 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
SKA3Q8IX90 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms