Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.74■□□□□ 0.11
PRKNO60260 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
PRKNO60260 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.74■□□□□ 0.11
PRKNO60260 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.74■□□□□ 0.11
PRKNO60260 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.74■□□□□ 0.11
PRKNO60260 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 AC106886.4-201ENST00000623557 2502 ntBASIC15.74■□□□□ 0.11
PRKNO60260 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC15.74■□□□□ 0.11
PRKNO60260 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PRKNO60260 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.73■□□□□ 0.11
PRKNO60260 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.73■□□□□ 0.11
PRKNO60260 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
PRKNO60260 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.73■□□□□ 0.11
PRKNO60260 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.73■□□□□ 0.11
PRKNO60260 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.73■□□□□ 0.11
PRKNO60260 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
PRKNO60260 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.73■□□□□ 0.11
PRKNO60260 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.73■□□□□ 0.11
PRKNO60260 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
PRKNO60260 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.73■□□□□ 0.11
PRKNO60260 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.73■□□□□ 0.11
PRKNO60260 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.73■□□□□ 0.11
PRKNO60260 KRT19P2-202ENST00000557173 1012 ntBASIC15.73■□□□□ 0.11
PRKNO60260 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.73■□□□□ 0.11
PRKNO60260 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.73■□□□□ 0.11
PRKNO60260 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 AC025580.3-201ENST00000617932 1424 ntBASIC15.73■□□□□ 0.11
PRKNO60260 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.73■□□□□ 0.11
PRKNO60260 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PRKNO60260 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.73■□□□□ 0.11
PRKNO60260 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.73■□□□□ 0.11
PRKNO60260 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PRKNO60260 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PRKNO60260 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.73■□□□□ 0.11
PRKNO60260 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PRKNO60260 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC15.73■□□□□ 0.11
PRKNO60260 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.72■□□□□ 0.11
PRKNO60260 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.72■□□□□ 0.11
PRKNO60260 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 AC129492.6-201ENST00000611383 1305 ntBASIC15.72■□□□□ 0.11
PRKNO60260 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.72■□□□□ 0.11
PRKNO60260 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
PRKNO60260 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.72■□□□□ 0.11
PRKNO60260 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 KRT18P13-201ENST00000400056 1290 ntBASIC15.72■□□□□ 0.11
PRKNO60260 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.72■□□□□ 0.11
PRKNO60260 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
PRKNO60260 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.72■□□□□ 0.11
PRKNO60260 AC004832.2-201ENST00000426397 482 ntBASIC15.72■□□□□ 0.11
PRKNO60260 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.72■□□□□ 0.11
PRKNO60260 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.72■□□□□ 0.11
PRKNO60260 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.72■□□□□ 0.11
PRKNO60260 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
PRKNO60260 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.72■□□□□ 0.11
PRKNO60260 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.72■□□□□ 0.11
PRKNO60260 AC002347.1-201ENST00000569543 541 ntBASIC15.72■□□□□ 0.11
PRKNO60260 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 AC010327.4-202ENST00000591484 748 ntBASIC15.72■□□□□ 0.11
PRKNO60260 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
PRKNO60260 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 AC011676.5-201ENST00000624864 2660 ntBASIC15.72■□□□□ 0.11
PRKNO60260 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
PRKNO60260 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.72■□□□□ 0.11
PRKNO60260 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PRKNO60260 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.72■□□□□ 0.11
PRKNO60260 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.72■□□□□ 0.11
PRKNO60260 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKNO60260 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms